Gene : Seita.7G291600 S. italica v2.2
Defline:  (1 of 1) PTHR17972 - NUCLEOLAR RNA-ASSOCIATED PROTEIN Genomic Order:  2916
Name:  ? Seita.7G291600 Secondary Identifier:  ? PAC:32704708
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G291600 0.5kb upstream 0.5kb upstream 8253 true scaffold_7: 33501250-33509502 Setaria italica
Seita.7G291600 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 33509003-33509502 Setaria italica
Seita.7G291600 0.5kb downstream 0.5kb downstream 8253 true scaffold_7: 33500750-33509002 Setaria italica
Seita.7G291600 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 33500750-33501249 Setaria italica
Seita.7G291600 1.0kb upstream 1.0kb upstream 8753 true scaffold_7: 33501250-33510002 Setaria italica
Seita.7G291600 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 33509003-33510002 Setaria italica
Seita.7G291600 1.0kb downstream 1.0kb downstream 8753 true scaffold_7: 33500250-33509002 Setaria italica
Seita.7G291600 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 33500250-33501249 Setaria italica
Seita.7G291600 2.0kb upstream 2.0kb upstream 9753 true scaffold_7: 33501250-33511002 Setaria italica
Seita.7G291600 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 33509003-33511002 Setaria italica
Seita.7G291600 2.0kb downstream 2.0kb downstream 9753 true scaffold_7: 33499250-33509002 Setaria italica
Seita.7G291600 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 33499250-33501249 Setaria italica
Seita.7G291600 5.0kb upstream 5.0kb upstream 12753 true scaffold_7: 33501250-33514002 Setaria italica
Seita.7G291600 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 33509003-33514002 Setaria italica
Seita.7G291600 5.0kb downstream 5.0kb downstream 12753 true scaffold_7: 33496250-33509002 Setaria italica
Seita.7G291600 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 33496250-33501249 Setaria italica
Seita.7G291600 10.0kb upstream 10.0kb upstream 17753 true scaffold_7: 33501250-33519002 Setaria italica
Seita.7G291600 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 33509003-33519002 Setaria italica
Seita.7G291600 10.0kb downstream 10.0kb downstream 17753 true scaffold_7: 33491250-33509002 Setaria italica
Seita.7G291600 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 33491250-33501249 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180052 5267 Panicoideae View MSA
124572210 5269 Grass View MSA
122046493 5273 Angiosperm View MSA
121346121 5274 Embryophyte View MSA
123425222 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.788        
cufflinks 4.697        
cufflinks 2.995        
cufflinks 1.119       Low
cufflinks 1.717       Low
cufflinks 4.756        
cufflinks 3.003        
cufflinks 2.8        
cufflinks 4.379        
cufflinks 2.145        
cufflinks 3.936        
cufflinks 4.16        
cufflinks 3.141        
cufflinks 4.669        
cufflinks 4.724        
cufflinks 3.611        
cufflinks 4.861        
cufflinks 4.193        
cufflinks 1.36       Low
cufflinks 4.803        

0 Strain