Gene : Seita.7G296600 S. italica v2.2
Defline:  (1 of 2) PTHR11638//PTHR11638:SF115 - ATP-DEPENDENT CLP PROTEASE Genomic Order:  2966
Name:  ? Seita.7G296600 Secondary Identifier:  ? PAC:32703819
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G296600 0.5kb upstream 0.5kb upstream 3435 true scaffold_7: 33815873-33819307 Setaria italica
Seita.7G296600 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 33818808-33819307 Setaria italica
Seita.7G296600 0.5kb downstream 0.5kb downstream 3435 true scaffold_7: 33815373-33818807 Setaria italica
Seita.7G296600 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 33815373-33815872 Setaria italica
Seita.7G296600 1.0kb upstream 1.0kb upstream 3935 true scaffold_7: 33815873-33819807 Setaria italica
Seita.7G296600 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 33818808-33819807 Setaria italica
Seita.7G296600 1.0kb downstream 1.0kb downstream 3935 true scaffold_7: 33814873-33818807 Setaria italica
Seita.7G296600 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 33814873-33815872 Setaria italica
Seita.7G296600 2.0kb upstream 2.0kb upstream 4935 true scaffold_7: 33815873-33820807 Setaria italica
Seita.7G296600 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 33818808-33820807 Setaria italica
Seita.7G296600 2.0kb downstream 2.0kb downstream 4935 true scaffold_7: 33813873-33818807 Setaria italica
Seita.7G296600 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 33813873-33815872 Setaria italica
Seita.7G296600 5.0kb upstream 5.0kb upstream 7935 true scaffold_7: 33815873-33823807 Setaria italica
Seita.7G296600 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 33818808-33823807 Setaria italica
Seita.7G296600 5.0kb downstream 5.0kb downstream 7935 true scaffold_7: 33810873-33818807 Setaria italica
Seita.7G296600 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 33810873-33815872 Setaria italica
Seita.7G296600 10.0kb upstream 10.0kb upstream 12935 true scaffold_7: 33815873-33828807 Setaria italica
Seita.7G296600 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 33818808-33828807 Setaria italica
Seita.7G296600 10.0kb downstream 10.0kb downstream 12935 true scaffold_7: 33805873-33818807 Setaria italica
Seita.7G296600 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 33805873-33815872 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189515 5267 Panicoideae View MSA
124589779 5269 Grass View MSA
122049419 5273 Angiosperm View MSA
121351273 5274 Embryophyte View MSA
123382090 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.272        
cufflinks 0.294        
cufflinks 0.23        
cufflinks 0.212        
cufflinks 0.084       Low
cufflinks 0.526       High
cufflinks 0.398        
cufflinks 0.315        
cufflinks 0.149       Low
cufflinks 0.374        
cufflinks 0.353        
cufflinks 0.246        
cufflinks 0.49        
cufflinks 0.893       High
cufflinks 0.273        
cufflinks 0.322        
cufflinks 0.601       High
cufflinks 0.335        
cufflinks 0.237        
cufflinks 0.418        

0 Strain