Gene : Seita.8G049400 S. italica v2.2
Defline:  (1 of 1) PTHR31580:SF2 - FILAMENT-LIKE PLANT PROTEIN 1-RELATED Genomic Order:  494
Name:  ? Seita.8G049400 Secondary Identifier:  ? PAC:32716380
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G049400 0.5kb upstream 0.5kb upstream 7687 true scaffold_8: 4187404-4195090 Setaria italica
Seita.8G049400 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 4194591-4195090 Setaria italica
Seita.8G049400 0.5kb downstream 0.5kb downstream 7687 true scaffold_8: 4186904-4194590 Setaria italica
Seita.8G049400 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 4186904-4187403 Setaria italica
Seita.8G049400 1.0kb upstream 1.0kb upstream 8187 true scaffold_8: 4187404-4195590 Setaria italica
Seita.8G049400 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 4194591-4195590 Setaria italica
Seita.8G049400 1.0kb downstream 1.0kb downstream 8187 true scaffold_8: 4186404-4194590 Setaria italica
Seita.8G049400 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 4186404-4187403 Setaria italica
Seita.8G049400 2.0kb upstream 2.0kb upstream 9187 true scaffold_8: 4187404-4196590 Setaria italica
Seita.8G049400 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 4194591-4196590 Setaria italica
Seita.8G049400 2.0kb downstream 2.0kb downstream 9187 true scaffold_8: 4185404-4194590 Setaria italica
Seita.8G049400 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 4185404-4187403 Setaria italica
Seita.8G049400 5.0kb upstream 5.0kb upstream 12187 true scaffold_8: 4187404-4199590 Setaria italica
Seita.8G049400 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 4194591-4199590 Setaria italica
Seita.8G049400 5.0kb downstream 5.0kb downstream 12187 true scaffold_8: 4182404-4194590 Setaria italica
Seita.8G049400 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 4182404-4187403 Setaria italica
Seita.8G049400 10.0kb upstream 10.0kb upstream 17187 true scaffold_8: 4187404-4204590 Setaria italica
Seita.8G049400 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 4194591-4204590 Setaria italica
Seita.8G049400 10.0kb downstream 10.0kb downstream 17187 true scaffold_8: 4177404-4194590 Setaria italica
Seita.8G049400 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 4177404-4187403 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194885 5267 Panicoideae View MSA
124569307 5269 Grass View MSA
122043487 5273 Angiosperm View MSA
121310135 5274 Embryophyte View MSA
123347707 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.916        
cufflinks 4.415       High
cufflinks 0.012     Low Low
cufflinks 0.017     Low Low
cufflinks 0.095        
cufflinks 4.349       High
cufflinks 1.43        
cufflinks 0.969        
cufflinks 0.735        
cufflinks 0.39        
cufflinks 0.943        
cufflinks 0.587        
cufflinks 1.008        
cufflinks 0.008     Low Low
cufflinks 1.523        
cufflinks 0.644        
cufflinks 0.746        
cufflinks 0.214        
cufflinks 0.005     Low Low
cufflinks 1.174        

0 Strain