Gene : Seita.8G050900 S. italica v2.2
Defline:  (1 of 2) PF10189 - Conserved protein (DUF2356) (DUF2356) Genomic Order:  509
Name:  ? Seita.8G050900 Secondary Identifier:  ? PAC:32716196
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G050900 0.5kb upstream 0.5kb upstream 2847 true scaffold_8: 4333157-4336003 Setaria italica
Seita.8G050900 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 4335504-4336003 Setaria italica
Seita.8G050900 0.5kb downstream 0.5kb downstream 2847 true scaffold_8: 4332657-4335503 Setaria italica
Seita.8G050900 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 4332657-4333156 Setaria italica
Seita.8G050900 1.0kb upstream 1.0kb upstream 3347 true scaffold_8: 4333157-4336503 Setaria italica
Seita.8G050900 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 4335504-4336503 Setaria italica
Seita.8G050900 1.0kb downstream 1.0kb downstream 3347 true scaffold_8: 4332157-4335503 Setaria italica
Seita.8G050900 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 4332157-4333156 Setaria italica
Seita.8G050900 2.0kb upstream 2.0kb upstream 4347 true scaffold_8: 4333157-4337503 Setaria italica
Seita.8G050900 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 4335504-4337503 Setaria italica
Seita.8G050900 2.0kb downstream 2.0kb downstream 4347 true scaffold_8: 4331157-4335503 Setaria italica
Seita.8G050900 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 4331157-4333156 Setaria italica
Seita.8G050900 5.0kb upstream 5.0kb upstream 7347 true scaffold_8: 4333157-4340503 Setaria italica
Seita.8G050900 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 4335504-4340503 Setaria italica
Seita.8G050900 5.0kb downstream 5.0kb downstream 7347 true scaffold_8: 4328157-4335503 Setaria italica
Seita.8G050900 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 4328157-4333156 Setaria italica
Seita.8G050900 10.0kb upstream 10.0kb upstream 12347 true scaffold_8: 4333157-4345503 Setaria italica
Seita.8G050900 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 4335504-4345503 Setaria italica
Seita.8G050900 10.0kb downstream 10.0kb downstream 12347 true scaffold_8: 4323157-4335503 Setaria italica
Seita.8G050900 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 4323157-4333156 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026317 5273 Angiosperm View MSA
122189342 5267 Panicoideae View MSA
124581942 5269 Grass View MSA
121296275 5274 Embryophyte View MSA
123334469 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.047        
cufflinks 3.495       High
cufflinks 0.688       Low
cufflinks 0.432       Low
cufflinks 0.727       Low
cufflinks 3.573       High
cufflinks 1.879        
cufflinks 1.636        
cufflinks 1.102        
cufflinks 1.969        
cufflinks 2.691        
cufflinks 2.009        
cufflinks 1.166        
cufflinks 1.008        
cufflinks 2.939       High
cufflinks 1.334        
cufflinks 2.215        
cufflinks 1.347        
cufflinks 0.825       Low
cufflinks 2.093        

0 Strain