Gene : Seita.8G054300 S. italica v2.2
Defline:  (1 of 1) KOG0108 - mRNA cleavage and polyadenylation factor I complex, subunit RNA15 Genomic Order:  543
Name:  ? Seita.8G054300 Secondary Identifier:  ? PAC:32715331
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G054300 0.5kb upstream 0.5kb upstream 6174 true scaffold_8: 4740084-4746257 Setaria italica
Seita.8G054300 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 4740084-4740583 Setaria italica
Seita.8G054300 0.5kb downstream 0.5kb downstream 6174 true scaffold_8: 4740584-4746757 Setaria italica
Seita.8G054300 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 4746258-4746757 Setaria italica
Seita.8G054300 1.0kb upstream 1.0kb upstream 6674 true scaffold_8: 4739584-4746257 Setaria italica
Seita.8G054300 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 4739584-4740583 Setaria italica
Seita.8G054300 1.0kb downstream 1.0kb downstream 6674 true scaffold_8: 4740584-4747257 Setaria italica
Seita.8G054300 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 4746258-4747257 Setaria italica
Seita.8G054300 2.0kb upstream 2.0kb upstream 7674 true scaffold_8: 4738584-4746257 Setaria italica
Seita.8G054300 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 4738584-4740583 Setaria italica
Seita.8G054300 2.0kb downstream 2.0kb downstream 7674 true scaffold_8: 4740584-4748257 Setaria italica
Seita.8G054300 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 4746258-4748257 Setaria italica
Seita.8G054300 5.0kb upstream 5.0kb upstream 10674 true scaffold_8: 4735584-4746257 Setaria italica
Seita.8G054300 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 4735584-4740583 Setaria italica
Seita.8G054300 5.0kb downstream 5.0kb downstream 10674 true scaffold_8: 4740584-4751257 Setaria italica
Seita.8G054300 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 4746258-4751257 Setaria italica
Seita.8G054300 10.0kb upstream 10.0kb upstream 15674 true scaffold_8: 4730584-4746257 Setaria italica
Seita.8G054300 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 4730584-4740583 Setaria italica
Seita.8G054300 10.0kb downstream 10.0kb downstream 15674 true scaffold_8: 4740584-4756257 Setaria italica
Seita.8G054300 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 4746258-4756257 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041194 5273 Angiosperm View MSA
122194002 5267 Panicoideae View MSA
124577581 5269 Grass View MSA
123429142 5275 Viridiplantae View MSA
121344917 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.132        
cufflinks 3.101        
cufflinks 3.657        
cufflinks 3.898       High
cufflinks 3.611        
cufflinks 3.569        
cufflinks 2.875        
cufflinks 3.418        
cufflinks 3.733        
cufflinks 2.035       Low
cufflinks 2.407       Low
cufflinks 2.786        
cufflinks 3.555        
cufflinks 2.889        
cufflinks 3.122        
cufflinks 3.806        
cufflinks 3.268        
cufflinks 3.6        
cufflinks 3.388        
cufflinks 3.636        

0 Strain