Gene : Seita.8G058800 S. italica v2.2
Defline:  (1 of 14) PF05097 - Protein of unknown function (DUF688) (DUF688) Genomic Order:  588
Name:  ? Seita.8G058800 Secondary Identifier:  ? PAC:32714976
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G058800 0.5kb upstream 0.5kb upstream 2683 true scaffold_8: 5299135-5301817 Setaria italica
Seita.8G058800 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 5301318-5301817 Setaria italica
Seita.8G058800 0.5kb downstream 0.5kb downstream 2683 true scaffold_8: 5298635-5301317 Setaria italica
Seita.8G058800 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 5298635-5299134 Setaria italica
Seita.8G058800 1.0kb upstream 1.0kb upstream 3183 true scaffold_8: 5299135-5302317 Setaria italica
Seita.8G058800 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 5301318-5302317 Setaria italica
Seita.8G058800 1.0kb downstream 1.0kb downstream 3183 true scaffold_8: 5298135-5301317 Setaria italica
Seita.8G058800 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 5298135-5299134 Setaria italica
Seita.8G058800 2.0kb upstream 2.0kb upstream 4183 true scaffold_8: 5299135-5303317 Setaria italica
Seita.8G058800 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 5301318-5303317 Setaria italica
Seita.8G058800 2.0kb downstream 2.0kb downstream 4183 true scaffold_8: 5297135-5301317 Setaria italica
Seita.8G058800 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 5297135-5299134 Setaria italica
Seita.8G058800 5.0kb upstream 5.0kb upstream 7183 true scaffold_8: 5299135-5306317 Setaria italica
Seita.8G058800 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 5301318-5306317 Setaria italica
Seita.8G058800 5.0kb downstream 5.0kb downstream 7183 true scaffold_8: 5294135-5301317 Setaria italica
Seita.8G058800 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 5294135-5299134 Setaria italica
Seita.8G058800 10.0kb upstream 10.0kb upstream 12183 true scaffold_8: 5299135-5311317 Setaria italica
Seita.8G058800 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 5301318-5311317 Setaria italica
Seita.8G058800 10.0kb downstream 10.0kb downstream 12183 true scaffold_8: 5289135-5301317 Setaria italica
Seita.8G058800 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 5289135-5299134 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027912 5273 Angiosperm View MSA
122176348 5267 Panicoideae View MSA
124580531 5269 Grass View MSA
121297488 5274 Embryophyte View MSA
123335540 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.499        
cufflinks 0.27       Low
cufflinks 0.697        
cufflinks 1.085        
cufflinks 1.04        
cufflinks 0.345       Low
cufflinks 1.488        
cufflinks 1.582        
cufflinks 0.87        
cufflinks 4.856       High
cufflinks 0.534        
cufflinks 7.307       High
cufflinks 4.016       High
cufflinks 3.81       High
cufflinks 1.642        
cufflinks 0.477       Low
cufflinks 5.107       High
cufflinks 0.44       Low
cufflinks 1.69        
cufflinks 2.858        

0 Strain