Gene : Seita.8G060100 S. italica v2.2
Defline:  (1 of 2) PTHR12802:SF41 - BRAHMA ASSOCIATED PROTEIN 155 KDA Genomic Order:  601
Name:  ? Seita.8G060100 Secondary Identifier:  ? PAC:32715040
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G060100 0.5kb upstream 0.5kb upstream 5950 true scaffold_8: 5586252-5592201 Setaria italica
Seita.8G060100 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 5586252-5586751 Setaria italica
Seita.8G060100 0.5kb downstream 0.5kb downstream 5950 true scaffold_8: 5586752-5592701 Setaria italica
Seita.8G060100 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 5592202-5592701 Setaria italica
Seita.8G060100 1.0kb upstream 1.0kb upstream 6450 true scaffold_8: 5585752-5592201 Setaria italica
Seita.8G060100 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 5585752-5586751 Setaria italica
Seita.8G060100 1.0kb downstream 1.0kb downstream 6450 true scaffold_8: 5586752-5593201 Setaria italica
Seita.8G060100 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 5592202-5593201 Setaria italica
Seita.8G060100 2.0kb upstream 2.0kb upstream 7450 true scaffold_8: 5584752-5592201 Setaria italica
Seita.8G060100 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 5584752-5586751 Setaria italica
Seita.8G060100 2.0kb downstream 2.0kb downstream 7450 true scaffold_8: 5586752-5594201 Setaria italica
Seita.8G060100 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 5592202-5594201 Setaria italica
Seita.8G060100 5.0kb upstream 5.0kb upstream 10450 true scaffold_8: 5581752-5592201 Setaria italica
Seita.8G060100 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 5581752-5586751 Setaria italica
Seita.8G060100 5.0kb downstream 5.0kb downstream 10450 true scaffold_8: 5586752-5597201 Setaria italica
Seita.8G060100 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 5592202-5597201 Setaria italica
Seita.8G060100 10.0kb upstream 10.0kb upstream 15450 true scaffold_8: 5576752-5592201 Setaria italica
Seita.8G060100 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 5576752-5586751 Setaria italica
Seita.8G060100 10.0kb downstream 10.0kb downstream 15450 true scaffold_8: 5586752-5602201 Setaria italica
Seita.8G060100 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 5592202-5602201 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182139 5267 Panicoideae View MSA
124583035 5269 Grass View MSA
122042836 5273 Angiosperm View MSA
121349137 5274 Embryophyte View MSA
123428437 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.246        
cufflinks 11.541        
cufflinks 10.26        
cufflinks 9.226        
cufflinks 7.881       Low
cufflinks 12.892       High
cufflinks 10.542        
cufflinks 8.507       Low
cufflinks 8.844        
cufflinks 8.431       Low
cufflinks 9.111        
cufflinks 10.932        
cufflinks 9.378        
cufflinks 10.601        
cufflinks 13.032       High
cufflinks 8.774        
cufflinks 12.703       High
cufflinks 9.924        
cufflinks 9.921        
cufflinks 12.813       High

0 Strain