Gene : Seita.8G063000 S. italica v2.2
Defline:  (1 of 1) PTHR20275:SF6 - NADH KINASE POS5, MITOCHONDRIAL Genomic Order:  630
Name:  ? Seita.8G063000 Secondary Identifier:  ? PAC:32716915
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5083 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G063000 0.5kb upstream 0.5kb upstream 6242 true scaffold_8: 6016839-6023080 Setaria italica
Seita.8G063000 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 6022581-6023080 Setaria italica
Seita.8G063000 0.5kb downstream 0.5kb downstream 6242 true scaffold_8: 6016339-6022580 Setaria italica
Seita.8G063000 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 6016339-6016838 Setaria italica
Seita.8G063000 1.0kb upstream 1.0kb upstream 6742 true scaffold_8: 6016839-6023580 Setaria italica
Seita.8G063000 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 6022581-6023580 Setaria italica
Seita.8G063000 1.0kb downstream 1.0kb downstream 6742 true scaffold_8: 6015839-6022580 Setaria italica
Seita.8G063000 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 6015839-6016838 Setaria italica
Seita.8G063000 2.0kb upstream 2.0kb upstream 7742 true scaffold_8: 6016839-6024580 Setaria italica
Seita.8G063000 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 6022581-6024580 Setaria italica
Seita.8G063000 2.0kb downstream 2.0kb downstream 7742 true scaffold_8: 6014839-6022580 Setaria italica
Seita.8G063000 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 6014839-6016838 Setaria italica
Seita.8G063000 5.0kb upstream 5.0kb upstream 10742 true scaffold_8: 6016839-6027580 Setaria italica
Seita.8G063000 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 6022581-6027580 Setaria italica
Seita.8G063000 5.0kb downstream 5.0kb downstream 10742 true scaffold_8: 6011839-6022580 Setaria italica
Seita.8G063000 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 6011839-6016838 Setaria italica
Seita.8G063000 10.0kb upstream 10.0kb upstream 15742 true scaffold_8: 6016839-6032580 Setaria italica
Seita.8G063000 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 6022581-6032580 Setaria italica
Seita.8G063000 10.0kb downstream 10.0kb downstream 15742 true scaffold_8: 6006839-6022580 Setaria italica
Seita.8G063000 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 6006839-6016838 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190359 5267 Panicoideae View MSA
124570524 5269 Grass View MSA
122042984 5273 Angiosperm View MSA
121349739 5274 Embryophyte View MSA
123425454 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.696     High  
cufflinks 10.126        
cufflinks 136.926     High High
cufflinks 129.868     High High
cufflinks 60.185     High  
cufflinks 10.424        
cufflinks 41.993     High  
cufflinks 32.852     High  
cufflinks 21.031     High  
cufflinks 6.319       Low
cufflinks 11.895        
cufflinks 11.738        
cufflinks 15.863     High  
cufflinks 55.404     High  
cufflinks 9.339        
cufflinks 79.91     High High
cufflinks 7.673       Low
cufflinks 60.122     High  
cufflinks 114.121     High High
cufflinks 7.883       Low

0 Strain