Gene : Seita.8G075200 S. italica v2.2
Defline:  (1 of 1) KOG3377 - Uncharacterized conserved protein Genomic Order:  752
Name:  ? Seita.8G075200 Secondary Identifier:  ? PAC:32717182
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G075200 0.5kb upstream 0.5kb upstream 3489 true scaffold_8: 8168603-8172091 Setaria italica
Seita.8G075200 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 8168603-8169102 Setaria italica
Seita.8G075200 0.5kb downstream 0.5kb downstream 3489 true scaffold_8: 8169103-8172591 Setaria italica
Seita.8G075200 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 8172092-8172591 Setaria italica
Seita.8G075200 1.0kb upstream 1.0kb upstream 3989 true scaffold_8: 8168103-8172091 Setaria italica
Seita.8G075200 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 8168103-8169102 Setaria italica
Seita.8G075200 1.0kb downstream 1.0kb downstream 3989 true scaffold_8: 8169103-8173091 Setaria italica
Seita.8G075200 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 8172092-8173091 Setaria italica
Seita.8G075200 2.0kb upstream 2.0kb upstream 4989 true scaffold_8: 8167103-8172091 Setaria italica
Seita.8G075200 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 8167103-8169102 Setaria italica
Seita.8G075200 2.0kb downstream 2.0kb downstream 4989 true scaffold_8: 8169103-8174091 Setaria italica
Seita.8G075200 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 8172092-8174091 Setaria italica
Seita.8G075200 5.0kb upstream 5.0kb upstream 7989 true scaffold_8: 8164103-8172091 Setaria italica
Seita.8G075200 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 8164103-8169102 Setaria italica
Seita.8G075200 5.0kb downstream 5.0kb downstream 7989 true scaffold_8: 8169103-8177091 Setaria italica
Seita.8G075200 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 8172092-8177091 Setaria italica
Seita.8G075200 10.0kb upstream 10.0kb upstream 12989 true scaffold_8: 8159103-8172091 Setaria italica
Seita.8G075200 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 8159103-8169102 Setaria italica
Seita.8G075200 10.0kb downstream 10.0kb downstream 12989 true scaffold_8: 8169103-8182091 Setaria italica
Seita.8G075200 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 8172092-8182091 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177446 5267 Panicoideae View MSA
124572533 5269 Grass View MSA
122042648 5273 Angiosperm View MSA
121351365 5274 Embryophyte View MSA
123425243 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.169        
cufflinks 2.709        
cufflinks 0.263       Low
cufflinks 0.025     Low Low
cufflinks 0.251       Low
cufflinks 2.976        
cufflinks 0.928        
cufflinks 3.083        
cufflinks 1.698        
cufflinks 3.076        
cufflinks 1.693        
cufflinks 2.339        
cufflinks 1.992        
cufflinks 1.062        
cufflinks 2.976        
cufflinks 0.468        
cufflinks 3.395        
cufflinks 0.387        
cufflinks 0.158       Low
cufflinks 3.581        

0 Strain