Gene : Seita.8G079400 S. italica v2.2
Defline:  (1 of 2) PTHR10133:SF22 - 5'-3' EXONUCLEASE FAMILY PROTEIN Genomic Order:  794
Name:  ? Seita.8G079400 Secondary Identifier:  ? PAC:32717623
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G079400 0.5kb upstream 0.5kb upstream 6819 true scaffold_8: 8561199-8568017 Setaria italica
Seita.8G079400 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 8567518-8568017 Setaria italica
Seita.8G079400 0.5kb downstream 0.5kb downstream 6819 true scaffold_8: 8560699-8567517 Setaria italica
Seita.8G079400 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 8560699-8561198 Setaria italica
Seita.8G079400 1.0kb upstream 1.0kb upstream 7319 true scaffold_8: 8561199-8568517 Setaria italica
Seita.8G079400 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 8567518-8568517 Setaria italica
Seita.8G079400 1.0kb downstream 1.0kb downstream 7319 true scaffold_8: 8560199-8567517 Setaria italica
Seita.8G079400 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 8560199-8561198 Setaria italica
Seita.8G079400 2.0kb upstream 2.0kb upstream 8319 true scaffold_8: 8561199-8569517 Setaria italica
Seita.8G079400 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 8567518-8569517 Setaria italica
Seita.8G079400 2.0kb downstream 2.0kb downstream 8319 true scaffold_8: 8559199-8567517 Setaria italica
Seita.8G079400 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 8559199-8561198 Setaria italica
Seita.8G079400 5.0kb upstream 5.0kb upstream 11319 true scaffold_8: 8561199-8572517 Setaria italica
Seita.8G079400 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 8567518-8572517 Setaria italica
Seita.8G079400 5.0kb downstream 5.0kb downstream 11319 true scaffold_8: 8556199-8567517 Setaria italica
Seita.8G079400 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 8556199-8561198 Setaria italica
Seita.8G079400 10.0kb upstream 10.0kb upstream 16319 true scaffold_8: 8561199-8577517 Setaria italica
Seita.8G079400 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 8567518-8577517 Setaria italica
Seita.8G079400 10.0kb downstream 10.0kb downstream 16319 true scaffold_8: 8551199-8567517 Setaria italica
Seita.8G079400 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 8551199-8561198 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122064275 5267 Panicoideae View MSA
124363667 5269 Grass View MSA
122042646 5273 Angiosperm View MSA
121346899 5274 Embryophyte View MSA
123425715 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.213        
cufflinks 0.354       High
cufflinks 0.25        
cufflinks 0.147        
cufflinks 0.164        
cufflinks 0.326       High
cufflinks 0.269        
cufflinks 0.309       High
cufflinks 0.374       High
cufflinks 0.188     Low  
cufflinks 0.176        
cufflinks 0.123     Low Low
cufflinks 0.113     Low Low
cufflinks 0.249        
cufflinks 0.146        
cufflinks 0.292        
cufflinks 0.179        
cufflinks 0.132       Low
cufflinks 0.125       Low
cufflinks 0.173        

0 Strain