Gene : Seita.8G002700 S. italica v2.2
Defline:  (1 of 5) PF11960 - Domain of unknown function (DUF3474) (DUF3474) Genomic Order:  27
Name:  ? Seita.8G002700 Secondary Identifier:  ? PAC:32715938
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G002700 0.5kb upstream 0.5kb upstream 4152 true scaffold_8: 176206-180357 Setaria italica
Seita.8G002700 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 179858-180357 Setaria italica
Seita.8G002700 0.5kb downstream 0.5kb downstream 4152 true scaffold_8: 175706-179857 Setaria italica
Seita.8G002700 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 175706-176205 Setaria italica
Seita.8G002700 1.0kb upstream 1.0kb upstream 4652 true scaffold_8: 176206-180857 Setaria italica
Seita.8G002700 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 179858-180857 Setaria italica
Seita.8G002700 1.0kb downstream 1.0kb downstream 4652 true scaffold_8: 175206-179857 Setaria italica
Seita.8G002700 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 175206-176205 Setaria italica
Seita.8G002700 2.0kb upstream 2.0kb upstream 5652 true scaffold_8: 176206-181857 Setaria italica
Seita.8G002700 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 179858-181857 Setaria italica
Seita.8G002700 2.0kb downstream 2.0kb downstream 5652 true scaffold_8: 174206-179857 Setaria italica
Seita.8G002700 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 174206-176205 Setaria italica
Seita.8G002700 5.0kb upstream 5.0kb upstream 8652 true scaffold_8: 176206-184857 Setaria italica
Seita.8G002700 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 179858-184857 Setaria italica
Seita.8G002700 5.0kb downstream 5.0kb downstream 8652 true scaffold_8: 171206-179857 Setaria italica
Seita.8G002700 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 171206-176205 Setaria italica
Seita.8G002700 10.0kb upstream 10.0kb upstream 13652 true scaffold_8: 176206-189857 Setaria italica
Seita.8G002700 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 179858-189857 Setaria italica
Seita.8G002700 10.0kb downstream 10.0kb downstream 13652 true scaffold_8: 166206-179857 Setaria italica
Seita.8G002700 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 166206-176205 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122019953 5273 Angiosperm View MSA
122193070 5267 Panicoideae View MSA
124581434 5269 Grass View MSA
121351532 5274 Embryophyte View MSA
123426688 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.785        
cufflinks 2.771        
cufflinks 2.192        
cufflinks 1.262       Low
cufflinks 2.261        
cufflinks 4.605        
cufflinks 5.369        
cufflinks 10.796       High
cufflinks 7.294        
cufflinks 5.558        
cufflinks 6.618        
cufflinks 4.861        
cufflinks 3.804        
cufflinks 2.165        
cufflinks 11.006       High
cufflinks 1.138       Low
cufflinks 10.576       High
cufflinks 0.81       Low
cufflinks 1.026       Low
cufflinks 13.25       High

0 Strain