Gene : Seita.8G005200 S. italica v2.2
Defline:  (1 of 67) PF03168 - Late embryogenesis abundant protein (LEA_2) Genomic Order:  52
Name:  ? Seita.8G005200 Secondary Identifier:  ? PAC:32717638
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G005200 0.5kb upstream 0.5kb upstream 2197 true scaffold_8: 307929-310125 Setaria italica
Seita.8G005200 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 307929-308428 Setaria italica
Seita.8G005200 0.5kb downstream 0.5kb downstream 2197 true scaffold_8: 308429-310625 Setaria italica
Seita.8G005200 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 310126-310625 Setaria italica
Seita.8G005200 1.0kb upstream 1.0kb upstream 2697 true scaffold_8: 307429-310125 Setaria italica
Seita.8G005200 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 307429-308428 Setaria italica
Seita.8G005200 1.0kb downstream 1.0kb downstream 2697 true scaffold_8: 308429-311125 Setaria italica
Seita.8G005200 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 310126-311125 Setaria italica
Seita.8G005200 2.0kb upstream 2.0kb upstream 3697 true scaffold_8: 306429-310125 Setaria italica
Seita.8G005200 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 306429-308428 Setaria italica
Seita.8G005200 2.0kb downstream 2.0kb downstream 3697 true scaffold_8: 308429-312125 Setaria italica
Seita.8G005200 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 310126-312125 Setaria italica
Seita.8G005200 5.0kb upstream 5.0kb upstream 6697 true scaffold_8: 303429-310125 Setaria italica
Seita.8G005200 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 303429-308428 Setaria italica
Seita.8G005200 5.0kb downstream 5.0kb downstream 6697 true scaffold_8: 308429-315125 Setaria italica
Seita.8G005200 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 310126-315125 Setaria italica
Seita.8G005200 10.0kb upstream 10.0kb upstream 11697 true scaffold_8: 298429-310125 Setaria italica
Seita.8G005200 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 298429-308428 Setaria italica
Seita.8G005200 10.0kb downstream 10.0kb downstream 11697 true scaffold_8: 308429-320125 Setaria italica
Seita.8G005200 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 310126-320125 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197682 5267 Panicoideae View MSA
124585832 5269 Grass View MSA
122042676 5273 Angiosperm View MSA
121351108 5274 Embryophyte View MSA
123382008 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.146       Low
cufflinks 0.098     Low Low
cufflinks 0.591        
cufflinks 0.777        
cufflinks 1.615       High
cufflinks 0.094     Low Low
cufflinks 0.39        
cufflinks 0.994        
cufflinks 0.365        
cufflinks 1.145        
cufflinks 0.158       Low
cufflinks 1.647       High
cufflinks 0.355        
cufflinks 1.762       High
cufflinks 0.497        
cufflinks 0.14       Low
cufflinks 0.504        
cufflinks 0.093     Low Low
cufflinks 0.803        
cufflinks 1.393       High

0 Strain