Gene : Seita.8G003200 S. italica v2.2
Defline:  (1 of 3) PTHR22850:SF6 - GLUTAMATE-RICH WD REPEAT-CONTAINING PROTEIN 1 Genomic Order:  32
Name:  ? Seita.8G003200 Secondary Identifier:  ? PAC:32716016
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G003200 0.5kb upstream 0.5kb upstream 4978 true scaffold_8: 210001-214978 Setaria italica
Seita.8G003200 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 210001-210500 Setaria italica
Seita.8G003200 0.5kb downstream 0.5kb downstream 4978 true scaffold_8: 210501-215478 Setaria italica
Seita.8G003200 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 214979-215478 Setaria italica
Seita.8G003200 1.0kb upstream 1.0kb upstream 5478 true scaffold_8: 209501-214978 Setaria italica
Seita.8G003200 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 209501-210500 Setaria italica
Seita.8G003200 1.0kb downstream 1.0kb downstream 5478 true scaffold_8: 210501-215978 Setaria italica
Seita.8G003200 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 214979-215978 Setaria italica
Seita.8G003200 2.0kb upstream 2.0kb upstream 6478 true scaffold_8: 208501-214978 Setaria italica
Seita.8G003200 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 208501-210500 Setaria italica
Seita.8G003200 2.0kb downstream 2.0kb downstream 6478 true scaffold_8: 210501-216978 Setaria italica
Seita.8G003200 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 214979-216978 Setaria italica
Seita.8G003200 5.0kb upstream 5.0kb upstream 9478 true scaffold_8: 205501-214978 Setaria italica
Seita.8G003200 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 205501-210500 Setaria italica
Seita.8G003200 5.0kb downstream 5.0kb downstream 9478 true scaffold_8: 210501-219978 Setaria italica
Seita.8G003200 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 214979-219978 Setaria italica
Seita.8G003200 10.0kb upstream 10.0kb upstream 14478 true scaffold_8: 200501-214978 Setaria italica
Seita.8G003200 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 200501-210500 Setaria italica
Seita.8G003200 10.0kb downstream 10.0kb downstream 14478 true scaffold_8: 210501-224978 Setaria italica
Seita.8G003200 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 214979-224978 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122065866 5267 Panicoideae View MSA
124589941 5269 Grass View MSA
122048731 5273 Angiosperm View MSA
121348301 5274 Embryophyte View MSA
123425749 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.859        
cufflinks 11.551        
cufflinks 6.803       Low
cufflinks 4.24       Low
cufflinks 6.061       Low
cufflinks 10.218        
cufflinks 8.686        
cufflinks 7.87        
cufflinks 11.143        
cufflinks 8.098        
cufflinks 10.8        
cufflinks 12.12        
cufflinks 8.051        
cufflinks 10.67        
cufflinks 10.983        
cufflinks 11.837        
cufflinks 11.643        
cufflinks 14.511     High High
cufflinks 6.235       Low
cufflinks 9.801        

0 Strain