Gene : Seita.8G006100 S. italica v2.2
Defline:  (1 of 2) PTHR21499:SF33 - HOMOSERINE DEHYDROGENASE Genomic Order:  61
Name:  ? Seita.8G006100 Secondary Identifier:  ? PAC:32715178
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica HOMOSERSYN-PWY Setaria italica pathologic  
Sitalica PWY-3001 Setaria italica pathologic  
Sitalica PWY-724 Setaria italica pathologic  
Sitalica THRESYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G006100 0.5kb upstream 0.5kb upstream 4962 true scaffold_8: 353479-358440 Setaria italica
Seita.8G006100 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 353479-353978 Setaria italica
Seita.8G006100 0.5kb downstream 0.5kb downstream 4962 true scaffold_8: 353979-358940 Setaria italica
Seita.8G006100 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 358441-358940 Setaria italica
Seita.8G006100 1.0kb upstream 1.0kb upstream 5462 true scaffold_8: 352979-358440 Setaria italica
Seita.8G006100 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 352979-353978 Setaria italica
Seita.8G006100 1.0kb downstream 1.0kb downstream 5462 true scaffold_8: 353979-359440 Setaria italica
Seita.8G006100 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 358441-359440 Setaria italica
Seita.8G006100 2.0kb upstream 2.0kb upstream 6462 true scaffold_8: 351979-358440 Setaria italica
Seita.8G006100 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 351979-353978 Setaria italica
Seita.8G006100 2.0kb downstream 2.0kb downstream 6462 true scaffold_8: 353979-360440 Setaria italica
Seita.8G006100 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 358441-360440 Setaria italica
Seita.8G006100 5.0kb upstream 5.0kb upstream 9462 true scaffold_8: 348979-358440 Setaria italica
Seita.8G006100 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 348979-353978 Setaria italica
Seita.8G006100 5.0kb downstream 5.0kb downstream 9462 true scaffold_8: 353979-363440 Setaria italica
Seita.8G006100 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 358441-363440 Setaria italica
Seita.8G006100 10.0kb upstream 10.0kb upstream 14462 true scaffold_8: 343979-358440 Setaria italica
Seita.8G006100 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 343979-353978 Setaria italica
Seita.8G006100 10.0kb downstream 10.0kb downstream 14462 true scaffold_8: 353979-368440 Setaria italica
Seita.8G006100 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 358441-368440 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188388 5267 Panicoideae View MSA
124571730 5269 Grass View MSA
122043747 5273 Angiosperm View MSA
121349256 5274 Embryophyte View MSA
123424216 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.845        
cufflinks 6.112        
cufflinks 6.068        
cufflinks 9.359       High
cufflinks 10.445       High
cufflinks 5.642        
cufflinks 7.112        
cufflinks 9.988       High
cufflinks 7.681        
cufflinks 8.896        
cufflinks 5.876        
cufflinks 5.357        
cufflinks 9.039       High
cufflinks 4.212       Low
cufflinks 5.476        
cufflinks 5.739        
cufflinks 6.979        
cufflinks 3.031       Low
cufflinks 8.147        
cufflinks 6.944        

0 Strain