Gene : Seita.8G015300 S. italica v2.2
Defline:  (1 of 1) PTHR13073:SF0 - BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 1 Genomic Order:  153
Name:  ? Seita.8G015300 Secondary Identifier:  ? PAC:32716729
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G015300 0.5kb upstream 0.5kb upstream 2028 true scaffold_8: 898906-900933 Setaria italica
Seita.8G015300 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 898906-899405 Setaria italica
Seita.8G015300 0.5kb downstream 0.5kb downstream 2028 true scaffold_8: 899406-901433 Setaria italica
Seita.8G015300 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 900934-901433 Setaria italica
Seita.8G015300 1.0kb upstream 1.0kb upstream 2528 true scaffold_8: 898406-900933 Setaria italica
Seita.8G015300 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 898406-899405 Setaria italica
Seita.8G015300 1.0kb downstream 1.0kb downstream 2528 true scaffold_8: 899406-901933 Setaria italica
Seita.8G015300 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 900934-901933 Setaria italica
Seita.8G015300 2.0kb upstream 2.0kb upstream 3528 true scaffold_8: 897406-900933 Setaria italica
Seita.8G015300 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 897406-899405 Setaria italica
Seita.8G015300 2.0kb downstream 2.0kb downstream 3528 true scaffold_8: 899406-902933 Setaria italica
Seita.8G015300 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 900934-902933 Setaria italica
Seita.8G015300 5.0kb upstream 5.0kb upstream 6528 true scaffold_8: 894406-900933 Setaria italica
Seita.8G015300 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 894406-899405 Setaria italica
Seita.8G015300 5.0kb downstream 5.0kb downstream 6528 true scaffold_8: 899406-905933 Setaria italica
Seita.8G015300 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 900934-905933 Setaria italica
Seita.8G015300 10.0kb upstream 10.0kb upstream 11528 true scaffold_8: 889406-900933 Setaria italica
Seita.8G015300 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 889406-899405 Setaria italica
Seita.8G015300 10.0kb downstream 10.0kb downstream 11528 true scaffold_8: 899406-910933 Setaria italica
Seita.8G015300 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 900934-910933 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191867 5267 Panicoideae View MSA
124579485 5269 Grass View MSA
122042285 5273 Angiosperm View MSA
121346098 5274 Embryophyte View MSA
123425317 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.713       Low
cufflinks 3.706       High
cufflinks 2.173        
cufflinks 2.649        
cufflinks 2.88        
cufflinks 3.103        
cufflinks 3.357        
cufflinks 3.894       High
cufflinks 3.443        
cufflinks 2.674        
cufflinks 1.484       Low
cufflinks 2.326        
cufflinks 3.89       High
cufflinks 2.836        
cufflinks 3.089        
cufflinks 2.351        
cufflinks 3.038        
cufflinks 1.647       Low
cufflinks 2.612        
cufflinks 4.229       High

0 Strain