Gene : Seita.8G015800 S. italica v2.2
Defline:  (1 of 2) 2.5.1.15 - Dihydropteroate synthase / Dihydropteroate pyrophosphorylase Genomic Order:  158
Name:  ? Seita.8G015800 Secondary Identifier:  ? PAC:32717451
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6147 Setaria italica pathologic  
Sitalica PWY-6612 Setaria italica pathologic  
Sitalica PWY-6614 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G015800 0.5kb upstream 0.5kb upstream 3888 true scaffold_8: 925228-929115 Setaria italica
Seita.8G015800 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 928616-929115 Setaria italica
Seita.8G015800 0.5kb downstream 0.5kb downstream 3888 true scaffold_8: 924728-928615 Setaria italica
Seita.8G015800 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 924728-925227 Setaria italica
Seita.8G015800 1.0kb upstream 1.0kb upstream 4388 true scaffold_8: 925228-929615 Setaria italica
Seita.8G015800 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 928616-929615 Setaria italica
Seita.8G015800 1.0kb downstream 1.0kb downstream 4388 true scaffold_8: 924228-928615 Setaria italica
Seita.8G015800 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 924228-925227 Setaria italica
Seita.8G015800 2.0kb upstream 2.0kb upstream 5388 true scaffold_8: 925228-930615 Setaria italica
Seita.8G015800 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 928616-930615 Setaria italica
Seita.8G015800 2.0kb downstream 2.0kb downstream 5388 true scaffold_8: 923228-928615 Setaria italica
Seita.8G015800 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 923228-925227 Setaria italica
Seita.8G015800 5.0kb upstream 5.0kb upstream 8388 true scaffold_8: 925228-933615 Setaria italica
Seita.8G015800 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 928616-933615 Setaria italica
Seita.8G015800 5.0kb downstream 5.0kb downstream 8388 true scaffold_8: 920228-928615 Setaria italica
Seita.8G015800 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 920228-925227 Setaria italica
Seita.8G015800 10.0kb upstream 10.0kb upstream 13388 true scaffold_8: 925228-938615 Setaria italica
Seita.8G015800 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 928616-938615 Setaria italica
Seita.8G015800 10.0kb downstream 10.0kb downstream 13388 true scaffold_8: 915228-928615 Setaria italica
Seita.8G015800 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 915228-925227 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194312 5267 Panicoideae View MSA
124573700 5269 Grass View MSA
122044899 5273 Angiosperm View MSA
121345768 5274 Embryophyte View MSA
123427891 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.832        
cufflinks 2.31       High
cufflinks 0.838       Low
cufflinks 0.641       Low
cufflinks 0.991        
cufflinks 1.823        
cufflinks 1.884        
cufflinks 1.722        
cufflinks 1.589        
cufflinks 0.928        
cufflinks 2.149       High
cufflinks 1.493        
cufflinks 1.303        
cufflinks 0.678       Low
cufflinks 1.918        
cufflinks 1.988        
cufflinks 1.709        
cufflinks 1.74        
cufflinks 0.689       Low
cufflinks 1.579        

0 Strain