Gene : Seita.8G018900 S. italica v2.2
Defline:  (1 of 63) PF14416 - PMR5 N terminal Domain (PMR5N) Genomic Order:  189
Name:  ? Seita.8G018900 Secondary Identifier:  ? PAC:32717563
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G018900 0.5kb upstream 0.5kb upstream 3673 true scaffold_8: 1075317-1078989 Setaria italica
Seita.8G018900 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 1078490-1078989 Setaria italica
Seita.8G018900 0.5kb downstream 0.5kb downstream 3673 true scaffold_8: 1074817-1078489 Setaria italica
Seita.8G018900 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 1074817-1075316 Setaria italica
Seita.8G018900 1.0kb upstream 1.0kb upstream 4173 true scaffold_8: 1075317-1079489 Setaria italica
Seita.8G018900 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 1078490-1079489 Setaria italica
Seita.8G018900 1.0kb downstream 1.0kb downstream 4173 true scaffold_8: 1074317-1078489 Setaria italica
Seita.8G018900 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 1074317-1075316 Setaria italica
Seita.8G018900 2.0kb upstream 2.0kb upstream 5173 true scaffold_8: 1075317-1080489 Setaria italica
Seita.8G018900 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 1078490-1080489 Setaria italica
Seita.8G018900 2.0kb downstream 2.0kb downstream 5173 true scaffold_8: 1073317-1078489 Setaria italica
Seita.8G018900 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 1073317-1075316 Setaria italica
Seita.8G018900 5.0kb upstream 5.0kb upstream 8173 true scaffold_8: 1075317-1083489 Setaria italica
Seita.8G018900 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 1078490-1083489 Setaria italica
Seita.8G018900 5.0kb downstream 5.0kb downstream 8173 true scaffold_8: 1070317-1078489 Setaria italica
Seita.8G018900 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 1070317-1075316 Setaria italica
Seita.8G018900 10.0kb upstream 10.0kb upstream 13173 true scaffold_8: 1075317-1088489 Setaria italica
Seita.8G018900 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 1078490-1088489 Setaria italica
Seita.8G018900 10.0kb downstream 10.0kb downstream 13173 true scaffold_8: 1065317-1078489 Setaria italica
Seita.8G018900 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 1065317-1075316 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176570 5267 Panicoideae View MSA
124465382 5269 Grass View MSA
122045837 5273 Angiosperm View MSA
121310513 5274 Embryophyte View MSA
123347976 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.735        
cufflinks 0.256        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.164        
cufflinks 0.216        
cufflinks 0.04     Low Low
cufflinks 0.061     Low Low
cufflinks 1.217        
cufflinks 1.889        
cufflinks 1.987        
cufflinks 2.993        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 5.89       High
cufflinks 0.068     Low Low
cufflinks 3.589       High
cufflinks 0.178        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.174       High

0 Strain