Gene : Seita.8G019100 S. italica v2.2
Defline:  (1 of 63) PF14416 - PMR5 N terminal Domain (PMR5N) Genomic Order:  191
Name:  ? Seita.8G019100 Secondary Identifier:  ? PAC:32716168
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G019100 0.5kb upstream 0.5kb upstream 2957 true scaffold_8: 1080096-1083052 Setaria italica
Seita.8G019100 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 1082553-1083052 Setaria italica
Seita.8G019100 0.5kb downstream 0.5kb downstream 2957 true scaffold_8: 1079596-1082552 Setaria italica
Seita.8G019100 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 1079596-1080095 Setaria italica
Seita.8G019100 1.0kb upstream 1.0kb upstream 3457 true scaffold_8: 1080096-1083552 Setaria italica
Seita.8G019100 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 1082553-1083552 Setaria italica
Seita.8G019100 1.0kb downstream 1.0kb downstream 3457 true scaffold_8: 1079096-1082552 Setaria italica
Seita.8G019100 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 1079096-1080095 Setaria italica
Seita.8G019100 2.0kb upstream 2.0kb upstream 4457 true scaffold_8: 1080096-1084552 Setaria italica
Seita.8G019100 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 1082553-1084552 Setaria italica
Seita.8G019100 2.0kb downstream 2.0kb downstream 4457 true scaffold_8: 1078096-1082552 Setaria italica
Seita.8G019100 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 1078096-1080095 Setaria italica
Seita.8G019100 5.0kb upstream 5.0kb upstream 7457 true scaffold_8: 1080096-1087552 Setaria italica
Seita.8G019100 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 1082553-1087552 Setaria italica
Seita.8G019100 5.0kb downstream 5.0kb downstream 7457 true scaffold_8: 1075096-1082552 Setaria italica
Seita.8G019100 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 1075096-1080095 Setaria italica
Seita.8G019100 10.0kb upstream 10.0kb upstream 12457 true scaffold_8: 1080096-1092552 Setaria italica
Seita.8G019100 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 1082553-1092552 Setaria italica
Seita.8G019100 10.0kb downstream 10.0kb downstream 12457 true scaffold_8: 1070096-1082552 Setaria italica
Seita.8G019100 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 1070096-1080095 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199699 5267 Panicoideae View MSA
124585665 5269 Grass View MSA
122045837 5273 Angiosperm View MSA
121310513 5274 Embryophyte View MSA
123347976 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.192        
cufflinks 18.612     High High
cufflinks 0.033     Low Low
cufflinks 0.053     Low Low
cufflinks 0.63        
cufflinks 20.213     High High
cufflinks 8.516        
cufflinks 5.034        
cufflinks 8.044        
cufflinks 1.38        
cufflinks 5.136        
cufflinks 1.959        
cufflinks 13.614     High  
cufflinks 0.012     Low Low
cufflinks 5.524        
cufflinks 1.81        
cufflinks 3.01        
cufflinks 0.443        
cufflinks 0.046     Low Low
cufflinks 3.914        

0 Strain