Gene : Seita.8G022300 S. italica v2.2
Defline:  (1 of 2) PTHR23346:SF19 - PROTEASOME-ASSOCIATED PROTEIN ECM29 HOMOLOG Genomic Order:  223
Name:  ? Seita.8G022300 Secondary Identifier:  ? PAC:32717502
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G022300 0.5kb upstream 0.5kb upstream 17299 true scaffold_8: 1299800-1317098 Setaria italica
Seita.8G022300 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 1316599-1317098 Setaria italica
Seita.8G022300 0.5kb downstream 0.5kb downstream 17299 true scaffold_8: 1299300-1316598 Setaria italica
Seita.8G022300 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 1299300-1299799 Setaria italica
Seita.8G022300 1.0kb upstream 1.0kb upstream 17799 true scaffold_8: 1299800-1317598 Setaria italica
Seita.8G022300 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 1316599-1317598 Setaria italica
Seita.8G022300 1.0kb downstream 1.0kb downstream 17799 true scaffold_8: 1298800-1316598 Setaria italica
Seita.8G022300 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 1298800-1299799 Setaria italica
Seita.8G022300 2.0kb upstream 2.0kb upstream 18799 true scaffold_8: 1299800-1318598 Setaria italica
Seita.8G022300 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 1316599-1318598 Setaria italica
Seita.8G022300 2.0kb downstream 2.0kb downstream 18799 true scaffold_8: 1297800-1316598 Setaria italica
Seita.8G022300 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 1297800-1299799 Setaria italica
Seita.8G022300 5.0kb upstream 5.0kb upstream 21799 true scaffold_8: 1299800-1321598 Setaria italica
Seita.8G022300 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 1316599-1321598 Setaria italica
Seita.8G022300 5.0kb downstream 5.0kb downstream 21799 true scaffold_8: 1294800-1316598 Setaria italica
Seita.8G022300 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 1294800-1299799 Setaria italica
Seita.8G022300 10.0kb upstream 10.0kb upstream 26799 true scaffold_8: 1299800-1326598 Setaria italica
Seita.8G022300 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 1316599-1326598 Setaria italica
Seita.8G022300 10.0kb downstream 10.0kb downstream 26799 true scaffold_8: 1289800-1316598 Setaria italica
Seita.8G022300 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 1289800-1299799 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190678 5267 Panicoideae View MSA
124578735 5269 Grass View MSA
122042594 5273 Angiosperm View MSA
121344548 5274 Embryophyte View MSA
123425052 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.454       High
cufflinks 2.848        
cufflinks 2.797        
cufflinks 2.252        
cufflinks 1.941        
cufflinks 2.412        
cufflinks 2.772        
cufflinks 1.685       Low
cufflinks 1.973        
cufflinks 1.404       Low
cufflinks 2.642        
cufflinks 2.428        
cufflinks 2.302        
cufflinks 2.245        
cufflinks 2.625        
cufflinks 3.797       High
cufflinks 1.845        
cufflinks 4.369       High
cufflinks 1.847        
cufflinks 2.199        

0 Strain