Gene : Seita.8G027400 S. italica v2.2
Defline:  (1 of 1) PTHR23086//PTHR23086:SF43 - PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE Genomic Order:  274
Name:  ? Seita.8G027400 Secondary Identifier:  ? PAC:32717121
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6351 Setaria italica pathologic  
Sitalica PWY-6352 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G027400 0.5kb upstream 0.5kb upstream 4210 true scaffold_8: 1688438-1692647 Setaria italica
Seita.8G027400 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 1692148-1692647 Setaria italica
Seita.8G027400 0.5kb downstream 0.5kb downstream 4210 true scaffold_8: 1687938-1692147 Setaria italica
Seita.8G027400 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 1687938-1688437 Setaria italica
Seita.8G027400 1.0kb upstream 1.0kb upstream 4710 true scaffold_8: 1688438-1693147 Setaria italica
Seita.8G027400 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 1692148-1693147 Setaria italica
Seita.8G027400 1.0kb downstream 1.0kb downstream 4710 true scaffold_8: 1687438-1692147 Setaria italica
Seita.8G027400 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 1687438-1688437 Setaria italica
Seita.8G027400 2.0kb upstream 2.0kb upstream 5710 true scaffold_8: 1688438-1694147 Setaria italica
Seita.8G027400 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 1692148-1694147 Setaria italica
Seita.8G027400 2.0kb downstream 2.0kb downstream 5710 true scaffold_8: 1686438-1692147 Setaria italica
Seita.8G027400 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 1686438-1688437 Setaria italica
Seita.8G027400 5.0kb upstream 5.0kb upstream 8710 true scaffold_8: 1688438-1697147 Setaria italica
Seita.8G027400 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 1692148-1697147 Setaria italica
Seita.8G027400 5.0kb downstream 5.0kb downstream 8710 true scaffold_8: 1683438-1692147 Setaria italica
Seita.8G027400 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 1683438-1688437 Setaria italica
Seita.8G027400 10.0kb upstream 10.0kb upstream 13710 true scaffold_8: 1688438-1702147 Setaria italica
Seita.8G027400 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 1692148-1702147 Setaria italica
Seita.8G027400 10.0kb downstream 10.0kb downstream 13710 true scaffold_8: 1678438-1692147 Setaria italica
Seita.8G027400 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 1678438-1688437 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199740 5267 Panicoideae View MSA
124586567 5269 Grass View MSA
122047903 5273 Angiosperm View MSA
121310813 5274 Embryophyte View MSA
123428791 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.093     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain