Gene : Seita.8G041900 S. italica v2.2
Defline:  (1 of 14) 3.2.2.22 - rRNA N-glycosylase / rRNA N-glycosidase Genomic Order:  419
Name:  ? Seita.8G041900 Secondary Identifier:  ? PAC:32717149
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G041900 0.5kb upstream 0.5kb upstream 3596 true scaffold_8: 3148333-3151928 Setaria italica
Seita.8G041900 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 3148333-3148832 Setaria italica
Seita.8G041900 0.5kb downstream 0.5kb downstream 3596 true scaffold_8: 3148833-3152428 Setaria italica
Seita.8G041900 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 3151929-3152428 Setaria italica
Seita.8G041900 1.0kb upstream 1.0kb upstream 4096 true scaffold_8: 3147833-3151928 Setaria italica
Seita.8G041900 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 3147833-3148832 Setaria italica
Seita.8G041900 1.0kb downstream 1.0kb downstream 4096 true scaffold_8: 3148833-3152928 Setaria italica
Seita.8G041900 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 3151929-3152928 Setaria italica
Seita.8G041900 2.0kb upstream 2.0kb upstream 5096 true scaffold_8: 3146833-3151928 Setaria italica
Seita.8G041900 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 3146833-3148832 Setaria italica
Seita.8G041900 2.0kb downstream 2.0kb downstream 5096 true scaffold_8: 3148833-3153928 Setaria italica
Seita.8G041900 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 3151929-3153928 Setaria italica
Seita.8G041900 5.0kb upstream 5.0kb upstream 8096 true scaffold_8: 3143833-3151928 Setaria italica
Seita.8G041900 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 3143833-3148832 Setaria italica
Seita.8G041900 5.0kb downstream 5.0kb downstream 8096 true scaffold_8: 3148833-3156928 Setaria italica
Seita.8G041900 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 3151929-3156928 Setaria italica
Seita.8G041900 10.0kb upstream 10.0kb upstream 13096 true scaffold_8: 3138833-3151928 Setaria italica
Seita.8G041900 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 3138833-3148832 Setaria italica
Seita.8G041900 10.0kb downstream 10.0kb downstream 13096 true scaffold_8: 3148833-3161928 Setaria italica
Seita.8G041900 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 3151929-3161928 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029309 5273 Angiosperm View MSA
122200163 5267 Panicoideae View MSA
124585943 5269 Grass View MSA
121298654 5274 Embryophyte View MSA
123336613 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.014     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.168     Low  
cufflinks 0.023     Low  
cufflinks 0.708        
cufflinks 0.076     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.094       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.387        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.688        

0 Strain