Gene : Seita.8G140800 S. italica v2.2
Defline:  (1 of 1) PTHR14025:SF21 - DEAD/DEAH BOX HELICASE-RELATED Genomic Order:  1408
Name:  ? Seita.8G140800 Secondary Identifier:  ? PAC:32716594
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G140800 0.5kb upstream 0.5kb upstream 9791 true scaffold_8: 27424792-27434582 Setaria italica
Seita.8G140800 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 27424792-27425291 Setaria italica
Seita.8G140800 0.5kb downstream 0.5kb downstream 9791 true scaffold_8: 27425292-27435082 Setaria italica
Seita.8G140800 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 27434583-27435082 Setaria italica
Seita.8G140800 1.0kb upstream 1.0kb upstream 10291 true scaffold_8: 27424292-27434582 Setaria italica
Seita.8G140800 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 27424292-27425291 Setaria italica
Seita.8G140800 1.0kb downstream 1.0kb downstream 10291 true scaffold_8: 27425292-27435582 Setaria italica
Seita.8G140800 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 27434583-27435582 Setaria italica
Seita.8G140800 2.0kb upstream 2.0kb upstream 11291 true scaffold_8: 27423292-27434582 Setaria italica
Seita.8G140800 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 27423292-27425291 Setaria italica
Seita.8G140800 2.0kb downstream 2.0kb downstream 11291 true scaffold_8: 27425292-27436582 Setaria italica
Seita.8G140800 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 27434583-27436582 Setaria italica
Seita.8G140800 5.0kb upstream 5.0kb upstream 14291 true scaffold_8: 27420292-27434582 Setaria italica
Seita.8G140800 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 27420292-27425291 Setaria italica
Seita.8G140800 5.0kb downstream 5.0kb downstream 14291 true scaffold_8: 27425292-27439582 Setaria italica
Seita.8G140800 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 27434583-27439582 Setaria italica
Seita.8G140800 10.0kb upstream 10.0kb upstream 19291 true scaffold_8: 27415292-27434582 Setaria italica
Seita.8G140800 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 27415292-27425291 Setaria italica
Seita.8G140800 10.0kb downstream 10.0kb downstream 19291 true scaffold_8: 27425292-27444582 Setaria italica
Seita.8G140800 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 27434583-27444582 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186971 5267 Panicoideae View MSA
124572287 5269 Grass View MSA
122045154 5273 Angiosperm View MSA
121349019 5274 Embryophyte View MSA
123425837 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.697        
cufflinks 3.783        
cufflinks 23.852     High High
cufflinks 18.121     High High
cufflinks 14.592     High High
cufflinks 5.125        
cufflinks 5.814        
cufflinks 8.835        
cufflinks 14.017     High High
cufflinks 1.139       Low
cufflinks 2.982        
cufflinks 0.721       Low
cufflinks 1.081       Low
cufflinks 13.843     High High
cufflinks 0.824       Low
cufflinks 8.238        
cufflinks 0.93       Low
cufflinks 3.474        
cufflinks 10.377        
cufflinks 0.819       Low

0 Strain