Gene : Seita.8G144500 S. italica v2.2
Defline:  (1 of 1) PTHR10992:SF773 - PROTEIN AUXIN RESPONSE 4 Genomic Order:  1445
Name:  ? Seita.8G144500 Secondary Identifier:  ? PAC:32716480
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G144500 0.5kb upstream 0.5kb upstream 2867 true scaffold_8: 28018520-28021386 Setaria italica
Seita.8G144500 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 28020887-28021386 Setaria italica
Seita.8G144500 0.5kb downstream 0.5kb downstream 2867 true scaffold_8: 28018020-28020886 Setaria italica
Seita.8G144500 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 28018020-28018519 Setaria italica
Seita.8G144500 1.0kb upstream 1.0kb upstream 3367 true scaffold_8: 28018520-28021886 Setaria italica
Seita.8G144500 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 28020887-28021886 Setaria italica
Seita.8G144500 1.0kb downstream 1.0kb downstream 3367 true scaffold_8: 28017520-28020886 Setaria italica
Seita.8G144500 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 28017520-28018519 Setaria italica
Seita.8G144500 2.0kb upstream 2.0kb upstream 4367 true scaffold_8: 28018520-28022886 Setaria italica
Seita.8G144500 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 28020887-28022886 Setaria italica
Seita.8G144500 2.0kb downstream 2.0kb downstream 4367 true scaffold_8: 28016520-28020886 Setaria italica
Seita.8G144500 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 28016520-28018519 Setaria italica
Seita.8G144500 5.0kb upstream 5.0kb upstream 7367 true scaffold_8: 28018520-28025886 Setaria italica
Seita.8G144500 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 28020887-28025886 Setaria italica
Seita.8G144500 5.0kb downstream 5.0kb downstream 7367 true scaffold_8: 28013520-28020886 Setaria italica
Seita.8G144500 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 28013520-28018519 Setaria italica
Seita.8G144500 10.0kb upstream 10.0kb upstream 12367 true scaffold_8: 28018520-28030886 Setaria italica
Seita.8G144500 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 28020887-28030886 Setaria italica
Seita.8G144500 10.0kb downstream 10.0kb downstream 12367 true scaffold_8: 28008520-28020886 Setaria italica
Seita.8G144500 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 28008520-28018519 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182158 5267 Panicoideae View MSA
124584985 5269 Grass View MSA
122047835 5273 Angiosperm View MSA
121347873 5274 Embryophyte View MSA
123380660 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.354        
cufflinks 6.912        
cufflinks 0.586       Low
cufflinks 0.552       Low
cufflinks 1.762        
cufflinks 6.279        
cufflinks 5.837        
cufflinks 6.648        
cufflinks 4.946        
cufflinks 12.726       High
cufflinks 8.296        
cufflinks 5.278        
cufflinks 2.873        
cufflinks 1.511        
cufflinks 8.178        
cufflinks 2.817        
cufflinks 7.206        
cufflinks 1.935        
cufflinks 1.302       Low
cufflinks 7.986        

0 Strain