Gene : Seita.8G142000 S. italica v2.2
Defline:  (1 of 1) PTHR31062:SF15 - XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 4-RELATED Genomic Order:  1420
Name:  ? Seita.8G142000 Secondary Identifier:  ? PAC:32716176
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G142000 0.5kb upstream 0.5kb upstream 2642 true scaffold_8: 27631522-27634163 Setaria italica
Seita.8G142000 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 27631522-27632021 Setaria italica
Seita.8G142000 0.5kb downstream 0.5kb downstream 2642 true scaffold_8: 27632022-27634663 Setaria italica
Seita.8G142000 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 27634164-27634663 Setaria italica
Seita.8G142000 1.0kb upstream 1.0kb upstream 3142 true scaffold_8: 27631022-27634163 Setaria italica
Seita.8G142000 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 27631022-27632021 Setaria italica
Seita.8G142000 1.0kb downstream 1.0kb downstream 3142 true scaffold_8: 27632022-27635163 Setaria italica
Seita.8G142000 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 27634164-27635163 Setaria italica
Seita.8G142000 2.0kb upstream 2.0kb upstream 4142 true scaffold_8: 27630022-27634163 Setaria italica
Seita.8G142000 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 27630022-27632021 Setaria italica
Seita.8G142000 2.0kb downstream 2.0kb downstream 4142 true scaffold_8: 27632022-27636163 Setaria italica
Seita.8G142000 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 27634164-27636163 Setaria italica
Seita.8G142000 5.0kb upstream 5.0kb upstream 7142 true scaffold_8: 27627022-27634163 Setaria italica
Seita.8G142000 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 27627022-27632021 Setaria italica
Seita.8G142000 5.0kb downstream 5.0kb downstream 7142 true scaffold_8: 27632022-27639163 Setaria italica
Seita.8G142000 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 27634164-27639163 Setaria italica
Seita.8G142000 10.0kb upstream 10.0kb upstream 12142 true scaffold_8: 27622022-27634163 Setaria italica
Seita.8G142000 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 27622022-27632021 Setaria italica
Seita.8G142000 10.0kb downstream 10.0kb downstream 12142 true scaffold_8: 27632022-27644163 Setaria italica
Seita.8G142000 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 27634164-27644163 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184944 5267 Panicoideae View MSA
124570001 5269 Grass View MSA
122042139 5273 Angiosperm View MSA
121350333 5274 Embryophyte View MSA
123381682 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.642     High  
cufflinks 27.754     High  
cufflinks 0.046     Low Low
cufflinks 0.013     Low Low
cufflinks 0.865        
cufflinks 28.44     High  
cufflinks 3.964        
cufflinks 8.875        
cufflinks 2.262        
cufflinks 168.14     High High
cufflinks 143.273     High High
cufflinks 1.495        
cufflinks 10.273        
cufflinks 0.065     Low Low
cufflinks 1.771        
cufflinks 3.094        
cufflinks 3.042        
cufflinks 0.917        
cufflinks 0.027     Low Low
cufflinks 4.394        

0 Strain