Gene : Seita.8G144900 S. italica v2.2
Defline:  (1 of 1) PTHR11659 - GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED Genomic Order:  1449
Name:  ? Seita.8G144900 Secondary Identifier:  ? PAC:32715164
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5921 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G144900 0.5kb upstream 0.5kb upstream 5103 true scaffold_8: 28037465-28042567 Setaria italica
Seita.8G144900 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 28042068-28042567 Setaria italica
Seita.8G144900 0.5kb downstream 0.5kb downstream 5103 true scaffold_8: 28036965-28042067 Setaria italica
Seita.8G144900 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 28036965-28037464 Setaria italica
Seita.8G144900 1.0kb upstream 1.0kb upstream 5603 true scaffold_8: 28037465-28043067 Setaria italica
Seita.8G144900 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 28042068-28043067 Setaria italica
Seita.8G144900 1.0kb downstream 1.0kb downstream 5603 true scaffold_8: 28036465-28042067 Setaria italica
Seita.8G144900 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 28036465-28037464 Setaria italica
Seita.8G144900 2.0kb upstream 2.0kb upstream 6603 true scaffold_8: 28037465-28044067 Setaria italica
Seita.8G144900 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 28042068-28044067 Setaria italica
Seita.8G144900 2.0kb downstream 2.0kb downstream 6603 true scaffold_8: 28035465-28042067 Setaria italica
Seita.8G144900 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 28035465-28037464 Setaria italica
Seita.8G144900 5.0kb upstream 5.0kb upstream 9603 true scaffold_8: 28037465-28047067 Setaria italica
Seita.8G144900 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 28042068-28047067 Setaria italica
Seita.8G144900 5.0kb downstream 5.0kb downstream 9603 true scaffold_8: 28032465-28042067 Setaria italica
Seita.8G144900 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 28032465-28037464 Setaria italica
Seita.8G144900 10.0kb upstream 10.0kb upstream 14603 true scaffold_8: 28037465-28052067 Setaria italica
Seita.8G144900 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 28042068-28052067 Setaria italica
Seita.8G144900 10.0kb downstream 10.0kb downstream 14603 true scaffold_8: 28027465-28042067 Setaria italica
Seita.8G144900 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 28027465-28037464 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182854 5267 Panicoideae View MSA
124574966 5269 Grass View MSA
122043391 5273 Angiosperm View MSA
121346505 5274 Embryophyte View MSA
123423998 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.371        
cufflinks 4.988        
cufflinks 4.205        
cufflinks 2.413        
cufflinks 7.762        
cufflinks 4.236        
cufflinks 9.9       High
cufflinks 10.46       High
cufflinks 19.896     High High
cufflinks 2.437        
cufflinks 3.796        
cufflinks 1.252       Low
cufflinks 1.091       Low
cufflinks 6.366        
cufflinks 1.975        
cufflinks 7.766        
cufflinks 1.615       Low
cufflinks 1.698        
cufflinks 2.675        
cufflinks 1.718        

0 Strain