Gene : Seita.8G145300 S. italica v2.2
Defline:  (1 of 23) 2.4.2.39 - Xyloglucan 6-xylosyltransferase / Xyloglucan 6-alpha-D-xylosyltransferase Genomic Order:  1453
Name:  ? Seita.8G145300 Secondary Identifier:  ? PAC:32716740
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5936 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G145300 0.5kb upstream 0.5kb upstream 1853 true scaffold_8: 28065736-28067588 Setaria italica
Seita.8G145300 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 28065736-28066235 Setaria italica
Seita.8G145300 0.5kb downstream 0.5kb downstream 1853 true scaffold_8: 28066236-28068088 Setaria italica
Seita.8G145300 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 28067589-28068088 Setaria italica
Seita.8G145300 1.0kb upstream 1.0kb upstream 2353 true scaffold_8: 28065236-28067588 Setaria italica
Seita.8G145300 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 28065236-28066235 Setaria italica
Seita.8G145300 1.0kb downstream 1.0kb downstream 2353 true scaffold_8: 28066236-28068588 Setaria italica
Seita.8G145300 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 28067589-28068588 Setaria italica
Seita.8G145300 2.0kb upstream 2.0kb upstream 3353 true scaffold_8: 28064236-28067588 Setaria italica
Seita.8G145300 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 28064236-28066235 Setaria italica
Seita.8G145300 2.0kb downstream 2.0kb downstream 3353 true scaffold_8: 28066236-28069588 Setaria italica
Seita.8G145300 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 28067589-28069588 Setaria italica
Seita.8G145300 5.0kb upstream 5.0kb upstream 6353 true scaffold_8: 28061236-28067588 Setaria italica
Seita.8G145300 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 28061236-28066235 Setaria italica
Seita.8G145300 5.0kb downstream 5.0kb downstream 6353 true scaffold_8: 28066236-28072588 Setaria italica
Seita.8G145300 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 28067589-28072588 Setaria italica
Seita.8G145300 10.0kb upstream 10.0kb upstream 11353 true scaffold_8: 28056236-28067588 Setaria italica
Seita.8G145300 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 28056236-28066235 Setaria italica
Seita.8G145300 10.0kb downstream 10.0kb downstream 11353 true scaffold_8: 28066236-28077588 Setaria italica
Seita.8G145300 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 28067589-28077588 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041044 5273 Angiosperm View MSA
122193763 5267 Panicoideae View MSA
124576790 5269 Grass View MSA
121352143 5274 Embryophyte View MSA
123428220 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low Low
cufflinks 0.025     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.879       High
cufflinks 0.025     Low  
cufflinks 0.199        
cufflinks 0.199        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.305        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.281        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.469        

0 Strain