Gene : Seita.8G161700 S. italica v2.2
Defline:  (1 of 1) PTHR23237 - NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1 Genomic Order:  1617
Name:  ? Seita.8G161700 Secondary Identifier:  ? PAC:32715861
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G161700 0.5kb upstream 0.5kb upstream 2570 true scaffold_8: 30348728-30351297 Setaria italica
Seita.8G161700 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 30348728-30349227 Setaria italica
Seita.8G161700 0.5kb downstream 0.5kb downstream 2570 true scaffold_8: 30349228-30351797 Setaria italica
Seita.8G161700 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 30351298-30351797 Setaria italica
Seita.8G161700 1.0kb upstream 1.0kb upstream 3070 true scaffold_8: 30348228-30351297 Setaria italica
Seita.8G161700 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 30348228-30349227 Setaria italica
Seita.8G161700 1.0kb downstream 1.0kb downstream 3070 true scaffold_8: 30349228-30352297 Setaria italica
Seita.8G161700 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 30351298-30352297 Setaria italica
Seita.8G161700 2.0kb upstream 2.0kb upstream 4070 true scaffold_8: 30347228-30351297 Setaria italica
Seita.8G161700 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 30347228-30349227 Setaria italica
Seita.8G161700 2.0kb downstream 2.0kb downstream 4070 true scaffold_8: 30349228-30353297 Setaria italica
Seita.8G161700 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 30351298-30353297 Setaria italica
Seita.8G161700 5.0kb upstream 5.0kb upstream 7070 true scaffold_8: 30344228-30351297 Setaria italica
Seita.8G161700 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 30344228-30349227 Setaria italica
Seita.8G161700 5.0kb downstream 5.0kb downstream 7070 true scaffold_8: 30349228-30356297 Setaria italica
Seita.8G161700 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 30351298-30356297 Setaria italica
Seita.8G161700 10.0kb upstream 10.0kb upstream 12070 true scaffold_8: 30339228-30351297 Setaria italica
Seita.8G161700 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 30339228-30349227 Setaria italica
Seita.8G161700 10.0kb downstream 10.0kb downstream 12070 true scaffold_8: 30349228-30361297 Setaria italica
Seita.8G161700 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 30351298-30361297 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182211 5267 Panicoideae View MSA
124570254 5269 Grass View MSA
122045887 5273 Angiosperm View MSA
121346687 5274 Embryophyte View MSA
123425060 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.891        
cufflinks 13.938     High  
cufflinks 1.948        
cufflinks 0.349       Low
cufflinks 1.09       Low
cufflinks 16.232     High  
cufflinks 5.889        
cufflinks 17.745     High  
cufflinks 12.218        
cufflinks 27.225     High High
cufflinks 10.28        
cufflinks 12.082        
cufflinks 6.758        
cufflinks 5.801        
cufflinks 13.798        
cufflinks 2.681        
cufflinks 18.56     High  
cufflinks 2.44        
cufflinks 1.215       Low
cufflinks 18.09     High  

0 Strain