Gene : Seita.8G083900 S. italica v2.2
Defline:  (1 of 1) PTHR23344:SF28 - GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 Genomic Order:  839
Name:  ? Seita.8G083900 Secondary Identifier:  ? PAC:32715048
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7409 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G083900 0.5kb upstream 0.5kb upstream 6225 true scaffold_8: 9714681-9720905 Setaria italica
Seita.8G083900 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 9714681-9715180 Setaria italica
Seita.8G083900 0.5kb downstream 0.5kb downstream 6225 true scaffold_8: 9715181-9721405 Setaria italica
Seita.8G083900 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 9720906-9721405 Setaria italica
Seita.8G083900 1.0kb upstream 1.0kb upstream 6725 true scaffold_8: 9714181-9720905 Setaria italica
Seita.8G083900 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 9714181-9715180 Setaria italica
Seita.8G083900 1.0kb downstream 1.0kb downstream 6725 true scaffold_8: 9715181-9721905 Setaria italica
Seita.8G083900 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 9720906-9721905 Setaria italica
Seita.8G083900 2.0kb upstream 2.0kb upstream 7725 true scaffold_8: 9713181-9720905 Setaria italica
Seita.8G083900 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 9713181-9715180 Setaria italica
Seita.8G083900 2.0kb downstream 2.0kb downstream 7725 true scaffold_8: 9715181-9722905 Setaria italica
Seita.8G083900 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 9720906-9722905 Setaria italica
Seita.8G083900 5.0kb upstream 5.0kb upstream 10725 true scaffold_8: 9710181-9720905 Setaria italica
Seita.8G083900 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 9710181-9715180 Setaria italica
Seita.8G083900 5.0kb downstream 5.0kb downstream 10725 true scaffold_8: 9715181-9725905 Setaria italica
Seita.8G083900 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 9720906-9725905 Setaria italica
Seita.8G083900 10.0kb upstream 10.0kb upstream 15725 true scaffold_8: 9705181-9720905 Setaria italica
Seita.8G083900 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 9705181-9715180 Setaria italica
Seita.8G083900 10.0kb downstream 10.0kb downstream 15725 true scaffold_8: 9715181-9730905 Setaria italica
Seita.8G083900 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 9720906-9730905 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195592 5267 Panicoideae View MSA
124581521 5269 Grass View MSA
122047219 5273 Angiosperm View MSA
121349016 5274 Embryophyte View MSA
123427418 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.782       High
cufflinks 4.044        
cufflinks 3.337        
cufflinks 3.06        
cufflinks 2.194       Low
cufflinks 4.259       High
cufflinks 2.831        
cufflinks 4.384       High
cufflinks 1.996       Low
cufflinks 2.289       Low
cufflinks 3.429        
cufflinks 3.901        
cufflinks 3.06        
cufflinks 2.585        
cufflinks 3.533        
cufflinks 3.732        
cufflinks 4.342       High
cufflinks 3.313        
cufflinks 2.358       Low
cufflinks 3.894        

0 Strain