Gene : Seita.8G083800 S. italica v2.2
Defline:  (1 of 22) PTHR23155//PTHR23155:SF541 - LEUCINE-RICH REPEAT-CONTAINING PROTEIN Genomic Order:  838
Name:  ? Seita.8G083800 Secondary Identifier:  ? PAC:32715459
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G083800 0.5kb upstream 0.5kb upstream 7411 true scaffold_8: 9677228-9684638 Setaria italica
Seita.8G083800 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 9677228-9677727 Setaria italica
Seita.8G083800 0.5kb downstream 0.5kb downstream 7411 true scaffold_8: 9677728-9685138 Setaria italica
Seita.8G083800 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 9684639-9685138 Setaria italica
Seita.8G083800 1.0kb upstream 1.0kb upstream 7911 true scaffold_8: 9676728-9684638 Setaria italica
Seita.8G083800 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 9676728-9677727 Setaria italica
Seita.8G083800 1.0kb downstream 1.0kb downstream 7911 true scaffold_8: 9677728-9685638 Setaria italica
Seita.8G083800 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 9684639-9685638 Setaria italica
Seita.8G083800 2.0kb upstream 2.0kb upstream 8911 true scaffold_8: 9675728-9684638 Setaria italica
Seita.8G083800 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 9675728-9677727 Setaria italica
Seita.8G083800 2.0kb downstream 2.0kb downstream 8911 true scaffold_8: 9677728-9686638 Setaria italica
Seita.8G083800 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 9684639-9686638 Setaria italica
Seita.8G083800 5.0kb upstream 5.0kb upstream 11911 true scaffold_8: 9672728-9684638 Setaria italica
Seita.8G083800 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 9672728-9677727 Setaria italica
Seita.8G083800 5.0kb downstream 5.0kb downstream 11911 true scaffold_8: 9677728-9689638 Setaria italica
Seita.8G083800 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 9684639-9689638 Setaria italica
Seita.8G083800 10.0kb upstream 10.0kb upstream 16911 true scaffold_8: 9667728-9684638 Setaria italica
Seita.8G083800 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 9667728-9677727 Setaria italica
Seita.8G083800 10.0kb downstream 10.0kb downstream 16911 true scaffold_8: 9677728-9694638 Setaria italica
Seita.8G083800 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 9684639-9694638 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199797 5267 Panicoideae View MSA
124590789 5269 Grass View MSA
122051706 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.526        
cufflinks 3.062        
cufflinks 14.237     High High
cufflinks 12.781     High High
cufflinks 13.294     High High
cufflinks 3.285        
cufflinks 5.912        
cufflinks 6.497        
cufflinks 7.391        
cufflinks 0.036     Low Low
cufflinks 0.665        
cufflinks 0.818        
cufflinks 0.456       Low
cufflinks 15.906     High High
cufflinks 1.315        
cufflinks 5.792        
cufflinks 1.773        
cufflinks 1.972        
cufflinks 11.334     High  
cufflinks 1.405        

0 Strain