Gene : Seita.8G093400 S. italica v2.2
Defline:  (1 of 2) PTHR23077:SF27 - SPERMATOGENESIS-ASSOCIATED PROTEIN 5 Genomic Order:  934
Name:  ? Seita.8G093400 Secondary Identifier:  ? PAC:32716776
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G093400 0.5kb upstream 0.5kb upstream 6738 true scaffold_8: 11896051-11902788 Setaria italica
Seita.8G093400 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 11902289-11902788 Setaria italica
Seita.8G093400 0.5kb downstream 0.5kb downstream 6738 true scaffold_8: 11895551-11902288 Setaria italica
Seita.8G093400 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 11895551-11896050 Setaria italica
Seita.8G093400 1.0kb upstream 1.0kb upstream 7238 true scaffold_8: 11896051-11903288 Setaria italica
Seita.8G093400 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 11902289-11903288 Setaria italica
Seita.8G093400 1.0kb downstream 1.0kb downstream 7238 true scaffold_8: 11895051-11902288 Setaria italica
Seita.8G093400 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 11895051-11896050 Setaria italica
Seita.8G093400 2.0kb upstream 2.0kb upstream 8238 true scaffold_8: 11896051-11904288 Setaria italica
Seita.8G093400 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 11902289-11904288 Setaria italica
Seita.8G093400 2.0kb downstream 2.0kb downstream 8238 true scaffold_8: 11894051-11902288 Setaria italica
Seita.8G093400 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 11894051-11896050 Setaria italica
Seita.8G093400 5.0kb upstream 5.0kb upstream 11238 true scaffold_8: 11896051-11907288 Setaria italica
Seita.8G093400 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 11902289-11907288 Setaria italica
Seita.8G093400 5.0kb downstream 5.0kb downstream 11238 true scaffold_8: 11891051-11902288 Setaria italica
Seita.8G093400 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 11891051-11896050 Setaria italica
Seita.8G093400 10.0kb upstream 10.0kb upstream 16238 true scaffold_8: 11896051-11912288 Setaria italica
Seita.8G093400 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 11902289-11912288 Setaria italica
Seita.8G093400 10.0kb downstream 10.0kb downstream 16238 true scaffold_8: 11886051-11902288 Setaria italica
Seita.8G093400 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 11886051-11896050 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198382 5267 Panicoideae View MSA
124573326 5269 Grass View MSA
122041889 5273 Angiosperm View MSA
121345411 5274 Embryophyte View MSA
123426108 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.785        
cufflinks 2.101       High
cufflinks 1.537        
cufflinks 0.92       Low
cufflinks 1.025       Low
cufflinks 2.046       High
cufflinks 1.255        
cufflinks 1.315        
cufflinks 1.511        
cufflinks 1.358        
cufflinks 1.836        
cufflinks 1.637        
cufflinks 1.143       Low
cufflinks 2.474       High
cufflinks 2.138       High
cufflinks 1.304        
cufflinks 1.903        
cufflinks 1.625        
cufflinks 1.016       Low
cufflinks 1.906        

0 Strain