Gene : Seita.8G094900 S. italica v2.2
Defline:  (1 of 1) 5.3.1.23 - S-methyl-5-thioribose-1-phosphate isomerase / S-methyl-5-thio-D-ribose-1-phosphate aldose-ketose-isomerase Genomic Order:  949
Name:  ? Seita.8G094900 Secondary Identifier:  ? PAC:32716563
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-4361 Setaria italica pathologic  
Sitalica PWY-7270 Setaria italica pathologic  
Sitalica PWY-7528 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G094900 0.5kb upstream 0.5kb upstream 5113 true scaffold_8: 12106749-12111861 Setaria italica
Seita.8G094900 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 12111362-12111861 Setaria italica
Seita.8G094900 0.5kb downstream 0.5kb downstream 5113 true scaffold_8: 12106249-12111361 Setaria italica
Seita.8G094900 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 12106249-12106748 Setaria italica
Seita.8G094900 1.0kb upstream 1.0kb upstream 5613 true scaffold_8: 12106749-12112361 Setaria italica
Seita.8G094900 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 12111362-12112361 Setaria italica
Seita.8G094900 1.0kb downstream 1.0kb downstream 5613 true scaffold_8: 12105749-12111361 Setaria italica
Seita.8G094900 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 12105749-12106748 Setaria italica
Seita.8G094900 2.0kb upstream 2.0kb upstream 6613 true scaffold_8: 12106749-12113361 Setaria italica
Seita.8G094900 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 12111362-12113361 Setaria italica
Seita.8G094900 2.0kb downstream 2.0kb downstream 6613 true scaffold_8: 12104749-12111361 Setaria italica
Seita.8G094900 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 12104749-12106748 Setaria italica
Seita.8G094900 5.0kb upstream 5.0kb upstream 9613 true scaffold_8: 12106749-12116361 Setaria italica
Seita.8G094900 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 12111362-12116361 Setaria italica
Seita.8G094900 5.0kb downstream 5.0kb downstream 9613 true scaffold_8: 12101749-12111361 Setaria italica
Seita.8G094900 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 12101749-12106748 Setaria italica
Seita.8G094900 10.0kb upstream 10.0kb upstream 14613 true scaffold_8: 12106749-12121361 Setaria italica
Seita.8G094900 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 12111362-12121361 Setaria italica
Seita.8G094900 10.0kb downstream 10.0kb downstream 14613 true scaffold_8: 12096749-12111361 Setaria italica
Seita.8G094900 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 12096749-12106748 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189674 5267 Panicoideae View MSA
124569280 5269 Grass View MSA
122043863 5273 Angiosperm View MSA
121310201 5274 Embryophyte View MSA
123428305 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.072     High  
cufflinks 11.672       Low
cufflinks 50.376     High High
cufflinks 55.171     High High
cufflinks 35.597     High High
cufflinks 13.46     High  
cufflinks 14.22     High  
cufflinks 19.449     High  
cufflinks 16.825     High  
cufflinks 20.696     High  
cufflinks 20.908     High  
cufflinks 19.417     High  
cufflinks 17.725     High  
cufflinks 21.191     High  
cufflinks 10.117       Low
cufflinks 13.98     High  
cufflinks 14.307     High  
cufflinks 9.472       Low
cufflinks 35.528     High High
cufflinks 16.598     High  

0 Strain