Gene : Seita.8G101900 S. italica v2.2
Defline:  (1 of 4) 1.13.11.70 - All-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase / Carotenoid cleavage dioxygenase 8 Genomic Order:  1019
Name:  ? Seita.8G101900 Secondary Identifier:  ? PAC:32715910
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7101 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G101900 0.5kb upstream 0.5kb upstream 8865 true scaffold_8: 13614556-13623420 Setaria italica
Seita.8G101900 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 13614556-13615055 Setaria italica
Seita.8G101900 0.5kb downstream 0.5kb downstream 8865 true scaffold_8: 13615056-13623920 Setaria italica
Seita.8G101900 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 13623421-13623920 Setaria italica
Seita.8G101900 1.0kb upstream 1.0kb upstream 9365 true scaffold_8: 13614056-13623420 Setaria italica
Seita.8G101900 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 13614056-13615055 Setaria italica
Seita.8G101900 1.0kb downstream 1.0kb downstream 9365 true scaffold_8: 13615056-13624420 Setaria italica
Seita.8G101900 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 13623421-13624420 Setaria italica
Seita.8G101900 2.0kb upstream 2.0kb upstream 10365 true scaffold_8: 13613056-13623420 Setaria italica
Seita.8G101900 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 13613056-13615055 Setaria italica
Seita.8G101900 2.0kb downstream 2.0kb downstream 10365 true scaffold_8: 13615056-13625420 Setaria italica
Seita.8G101900 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 13623421-13625420 Setaria italica
Seita.8G101900 5.0kb upstream 5.0kb upstream 13365 true scaffold_8: 13610056-13623420 Setaria italica
Seita.8G101900 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 13610056-13615055 Setaria italica
Seita.8G101900 5.0kb downstream 5.0kb downstream 13365 true scaffold_8: 13615056-13628420 Setaria italica
Seita.8G101900 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 13623421-13628420 Setaria italica
Seita.8G101900 10.0kb upstream 10.0kb upstream 18365 true scaffold_8: 13605056-13623420 Setaria italica
Seita.8G101900 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 13605056-13615055 Setaria italica
Seita.8G101900 10.0kb downstream 10.0kb downstream 18365 true scaffold_8: 13615056-13633420 Setaria italica
Seita.8G101900 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 13623421-13633420 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181235 5267 Panicoideae View MSA
124587364 5269 Grass View MSA
122048984 5273 Angiosperm View MSA
123428919 5275 Viridiplantae View MSA
121344649 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.022     Low Low
cufflinks 2.569       High
cufflinks 0.027     Low  
cufflinks 0.032     Low  
cufflinks 0.092        
cufflinks 1.598       High
cufflinks 0.209        
cufflinks 0.736        
cufflinks 0.203        
cufflinks 0.011     Low Low
cufflinks 0.016     Low Low
cufflinks 1.424        
cufflinks 0.246        
cufflinks 0.622        
cufflinks 1.932       High
cufflinks 0.06     Low  
cufflinks 0.735        
cufflinks 0.002     Low Low
cufflinks 0.257        
cufflinks 4.858       High

0 Strain