Gene : Seita.8G104600 S. italica v2.2
Defline:  (1 of 2) PTHR16092 - SEC3/SYNTAXIN-RELATED Genomic Order:  1046
Name:  ? Seita.8G104600 Secondary Identifier:  ? PAC:32715831
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G104600 0.5kb upstream 0.5kb upstream 17872 true scaffold_8: 14060804-14078675 Setaria italica
Seita.8G104600 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 14060804-14061303 Setaria italica
Seita.8G104600 0.5kb downstream 0.5kb downstream 17872 true scaffold_8: 14061304-14079175 Setaria italica
Seita.8G104600 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 14078676-14079175 Setaria italica
Seita.8G104600 1.0kb upstream 1.0kb upstream 18372 true scaffold_8: 14060304-14078675 Setaria italica
Seita.8G104600 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 14060304-14061303 Setaria italica
Seita.8G104600 1.0kb downstream 1.0kb downstream 18372 true scaffold_8: 14061304-14079675 Setaria italica
Seita.8G104600 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 14078676-14079675 Setaria italica
Seita.8G104600 2.0kb upstream 2.0kb upstream 19372 true scaffold_8: 14059304-14078675 Setaria italica
Seita.8G104600 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 14059304-14061303 Setaria italica
Seita.8G104600 2.0kb downstream 2.0kb downstream 19372 true scaffold_8: 14061304-14080675 Setaria italica
Seita.8G104600 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 14078676-14080675 Setaria italica
Seita.8G104600 5.0kb upstream 5.0kb upstream 22372 true scaffold_8: 14056304-14078675 Setaria italica
Seita.8G104600 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 14056304-14061303 Setaria italica
Seita.8G104600 5.0kb downstream 5.0kb downstream 22372 true scaffold_8: 14061304-14083675 Setaria italica
Seita.8G104600 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 14078676-14083675 Setaria italica
Seita.8G104600 10.0kb upstream 10.0kb upstream 27372 true scaffold_8: 14051304-14078675 Setaria italica
Seita.8G104600 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 14051304-14061303 Setaria italica
Seita.8G104600 10.0kb downstream 10.0kb downstream 27372 true scaffold_8: 14061304-14088675 Setaria italica
Seita.8G104600 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 14078676-14088675 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184393 5267 Panicoideae View MSA
124570633 5269 Grass View MSA
122043094 5273 Angiosperm View MSA
121346884 5274 Embryophyte View MSA
123428518 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.012     Low  
cufflinks 0.006     Low  
cufflinks 0.001     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low High
cufflinks 0.003     Low  
cufflinks 0.004     Low  
cufflinks 0.004     Low  
cufflinks 0.013     Low High
cufflinks 0.015     Low High
cufflinks 0.004     Low  
cufflinks 0.001     Low Low
cufflinks 0.005     Low  
cufflinks 0.012     Low  
cufflinks 0.002     Low Low
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  

0 Strain