Gene : Seita.8G114300 S. italica v2.2
Defline:  (1 of 2) PTHR11205:SF24 - 40S RIBOSOMAL PROTEIN S5-1-RELATED Genomic Order:  1143
Name:  ? Seita.8G114300 Secondary Identifier:  ? PAC:32717261
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G114300 0.5kb upstream 0.5kb upstream 4034 true scaffold_8: 20248643-20252676 Setaria italica
Seita.8G114300 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 20248643-20249142 Setaria italica
Seita.8G114300 0.5kb downstream 0.5kb downstream 4034 true scaffold_8: 20249143-20253176 Setaria italica
Seita.8G114300 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 20252677-20253176 Setaria italica
Seita.8G114300 1.0kb upstream 1.0kb upstream 4534 true scaffold_8: 20248143-20252676 Setaria italica
Seita.8G114300 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 20248143-20249142 Setaria italica
Seita.8G114300 1.0kb downstream 1.0kb downstream 4534 true scaffold_8: 20249143-20253676 Setaria italica
Seita.8G114300 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 20252677-20253676 Setaria italica
Seita.8G114300 2.0kb upstream 2.0kb upstream 5534 true scaffold_8: 20247143-20252676 Setaria italica
Seita.8G114300 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 20247143-20249142 Setaria italica
Seita.8G114300 2.0kb downstream 2.0kb downstream 5534 true scaffold_8: 20249143-20254676 Setaria italica
Seita.8G114300 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 20252677-20254676 Setaria italica
Seita.8G114300 5.0kb upstream 5.0kb upstream 8534 true scaffold_8: 20244143-20252676 Setaria italica
Seita.8G114300 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 20244143-20249142 Setaria italica
Seita.8G114300 5.0kb downstream 5.0kb downstream 8534 true scaffold_8: 20249143-20257676 Setaria italica
Seita.8G114300 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 20252677-20257676 Setaria italica
Seita.8G114300 10.0kb upstream 10.0kb upstream 13534 true scaffold_8: 20239143-20252676 Setaria italica
Seita.8G114300 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 20239143-20249142 Setaria italica
Seita.8G114300 10.0kb downstream 10.0kb downstream 13534 true scaffold_8: 20249143-20262676 Setaria italica
Seita.8G114300 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 20252677-20262676 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186387 5267 Panicoideae View MSA
124586912 5269 Grass View MSA
122048966 5273 Angiosperm View MSA
121345669 5274 Embryophyte View MSA
123423957 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.908     High  
cufflinks 59.314     High  
cufflinks 26.138     High  
cufflinks 15.804     High Low
cufflinks 21.998     High Low
cufflinks 61.155     High  
cufflinks 40.218     High  
cufflinks 59.068     High  
cufflinks 67.47     High High
cufflinks 89.266     High High
cufflinks 44.879     High  
cufflinks 42.462     High  
cufflinks 36.172     High  
cufflinks 51.673     High  
cufflinks 48.921     High  
cufflinks 22.284     High Low
cufflinks 62.087     High  
cufflinks 20.746     High Low
cufflinks 29.001     High  
cufflinks 54.874     High  

0 Strain