Gene : Seita.8G116100 S. italica v2.2
Defline:  (1 of 1) PF06337//PF13423//PF14533 - DUSP domain (DUSP) // Ubiquitin carboxyl-terminal hydrolase (UCH_1) // Ubiquitin-specific protease C-terminal (USP7_C2) Genomic Order:  1161
Name:  ? Seita.8G116100 Secondary Identifier:  ? PAC:32716951
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G116100 0.5kb upstream 0.5kb upstream 10033 true scaffold_8: 21603981-21614013 Setaria italica
Seita.8G116100 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 21613514-21614013 Setaria italica
Seita.8G116100 0.5kb downstream 0.5kb downstream 10033 true scaffold_8: 21603481-21613513 Setaria italica
Seita.8G116100 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 21603481-21603980 Setaria italica
Seita.8G116100 1.0kb upstream 1.0kb upstream 10533 true scaffold_8: 21603981-21614513 Setaria italica
Seita.8G116100 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 21613514-21614513 Setaria italica
Seita.8G116100 1.0kb downstream 1.0kb downstream 10533 true scaffold_8: 21602981-21613513 Setaria italica
Seita.8G116100 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 21602981-21603980 Setaria italica
Seita.8G116100 2.0kb upstream 2.0kb upstream 11533 true scaffold_8: 21603981-21615513 Setaria italica
Seita.8G116100 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 21613514-21615513 Setaria italica
Seita.8G116100 2.0kb downstream 2.0kb downstream 11533 true scaffold_8: 21601981-21613513 Setaria italica
Seita.8G116100 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 21601981-21603980 Setaria italica
Seita.8G116100 5.0kb upstream 5.0kb upstream 14533 true scaffold_8: 21603981-21618513 Setaria italica
Seita.8G116100 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 21613514-21618513 Setaria italica
Seita.8G116100 5.0kb downstream 5.0kb downstream 14533 true scaffold_8: 21598981-21613513 Setaria italica
Seita.8G116100 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 21598981-21603980 Setaria italica
Seita.8G116100 10.0kb upstream 10.0kb upstream 19533 true scaffold_8: 21603981-21623513 Setaria italica
Seita.8G116100 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 21613514-21623513 Setaria italica
Seita.8G116100 10.0kb downstream 10.0kb downstream 19533 true scaffold_8: 21593981-21613513 Setaria italica
Seita.8G116100 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 21593981-21603980 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184904 5267 Panicoideae View MSA
124581118 5269 Grass View MSA
122043938 5273 Angiosperm View MSA
121310212 5274 Embryophyte View MSA
123426305 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.728       High
cufflinks 5.222       High
cufflinks 4.363        
cufflinks 3.603        
cufflinks 3.166        
cufflinks 4.884        
cufflinks 4.613        
cufflinks 3.918        
cufflinks 3.515        
cufflinks 2.18       Low
cufflinks 4.398        
cufflinks 3.807        
cufflinks 3.507        
cufflinks 3.339        
cufflinks 4.302        
cufflinks 6.094       High
cufflinks 3.474        
cufflinks 6.217       High
cufflinks 3.154        
cufflinks 3.819        

0 Strain