Gene : Seita.8G116600 S. italica v2.2
Defline:  (1 of 1) PTHR12608//PTHR12608:SF5 - TRANSMEMBRANE PROTEIN HTP-1 RELATED Genomic Order:  1166
Name:  ? Seita.8G116600 Secondary Identifier:  ? PAC:32716149
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G116600 0.5kb upstream 0.5kb upstream 4907 true scaffold_8: 21635020-21639926 Setaria italica
Seita.8G116600 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 21639427-21639926 Setaria italica
Seita.8G116600 0.5kb downstream 0.5kb downstream 4907 true scaffold_8: 21634520-21639426 Setaria italica
Seita.8G116600 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 21634520-21635019 Setaria italica
Seita.8G116600 1.0kb upstream 1.0kb upstream 5407 true scaffold_8: 21635020-21640426 Setaria italica
Seita.8G116600 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 21639427-21640426 Setaria italica
Seita.8G116600 1.0kb downstream 1.0kb downstream 5407 true scaffold_8: 21634020-21639426 Setaria italica
Seita.8G116600 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 21634020-21635019 Setaria italica
Seita.8G116600 2.0kb upstream 2.0kb upstream 6407 true scaffold_8: 21635020-21641426 Setaria italica
Seita.8G116600 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 21639427-21641426 Setaria italica
Seita.8G116600 2.0kb downstream 2.0kb downstream 6407 true scaffold_8: 21633020-21639426 Setaria italica
Seita.8G116600 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 21633020-21635019 Setaria italica
Seita.8G116600 5.0kb upstream 5.0kb upstream 9407 true scaffold_8: 21635020-21644426 Setaria italica
Seita.8G116600 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 21639427-21644426 Setaria italica
Seita.8G116600 5.0kb downstream 5.0kb downstream 9407 true scaffold_8: 21630020-21639426 Setaria italica
Seita.8G116600 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 21630020-21635019 Setaria italica
Seita.8G116600 10.0kb upstream 10.0kb upstream 14407 true scaffold_8: 21635020-21649426 Setaria italica
Seita.8G116600 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 21639427-21649426 Setaria italica
Seita.8G116600 10.0kb downstream 10.0kb downstream 14407 true scaffold_8: 21625020-21639426 Setaria italica
Seita.8G116600 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 21625020-21635019 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186640 5267 Panicoideae View MSA
124585153 5269 Grass View MSA
122047998 5273 Angiosperm View MSA
121345967 5274 Embryophyte View MSA
123428725 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.519        
cufflinks 10.613        
cufflinks 6.003       Low
cufflinks 6.716        
cufflinks 5.952       Low
cufflinks 11.155        
cufflinks 7.234        
cufflinks 10.825        
cufflinks 6.91        
cufflinks 15.334       High
cufflinks 10.087        
cufflinks 9.469        
cufflinks 10.684        
cufflinks 7.684        
cufflinks 12.193       High
cufflinks 6.026       Low
cufflinks 11.219        
cufflinks 6.357       Low
cufflinks 5.901       Low
cufflinks 11.045        

0 Strain