Gene : Seita.8G121600 S. italica v2.2
Defline:  (1 of 2) 1.5.1.3//2.1.1.45 - Dihydrofolate reductase / Tetrahydrofolate dehydrogenase Genomic Order:  1216
Name:  ? Seita.8G121600 Secondary Identifier:  ? PAC:32717286
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3841 Setaria italica pathologic  
Sitalica PWY-6612 Setaria italica pathologic  
Sitalica PWY-6614 Setaria italica pathologic  
Sitalica PWY-7184 Setaria italica pathologic  
Sitalica PWY-7199 Setaria italica pathologic  
Sitalica PWY-7200 Setaria italica pathologic  
Sitalica PWY-7210 Setaria italica pathologic  
Sitalica PWY-7211 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G121600 0.5kb upstream 0.5kb upstream 8646 true scaffold_8: 23085685-23094330 Setaria italica
Seita.8G121600 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 23085685-23086184 Setaria italica
Seita.8G121600 0.5kb downstream 0.5kb downstream 8646 true scaffold_8: 23086185-23094830 Setaria italica
Seita.8G121600 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 23094331-23094830 Setaria italica
Seita.8G121600 1.0kb upstream 1.0kb upstream 9146 true scaffold_8: 23085185-23094330 Setaria italica
Seita.8G121600 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 23085185-23086184 Setaria italica
Seita.8G121600 1.0kb downstream 1.0kb downstream 9146 true scaffold_8: 23086185-23095330 Setaria italica
Seita.8G121600 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 23094331-23095330 Setaria italica
Seita.8G121600 2.0kb upstream 2.0kb upstream 10146 true scaffold_8: 23084185-23094330 Setaria italica
Seita.8G121600 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 23084185-23086184 Setaria italica
Seita.8G121600 2.0kb downstream 2.0kb downstream 10146 true scaffold_8: 23086185-23096330 Setaria italica
Seita.8G121600 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 23094331-23096330 Setaria italica
Seita.8G121600 5.0kb upstream 5.0kb upstream 13146 true scaffold_8: 23081185-23094330 Setaria italica
Seita.8G121600 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 23081185-23086184 Setaria italica
Seita.8G121600 5.0kb downstream 5.0kb downstream 13146 true scaffold_8: 23086185-23099330 Setaria italica
Seita.8G121600 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 23094331-23099330 Setaria italica
Seita.8G121600 10.0kb upstream 10.0kb upstream 18146 true scaffold_8: 23076185-23094330 Setaria italica
Seita.8G121600 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 23076185-23086184 Setaria italica
Seita.8G121600 10.0kb downstream 10.0kb downstream 18146 true scaffold_8: 23086185-23104330 Setaria italica
Seita.8G121600 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 23094331-23104330 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122063837 5267 Panicoideae View MSA
124363286 5269 Grass View MSA
122041907 5273 Angiosperm View MSA
121345404 5274 Embryophyte View MSA
123424391 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.977       High
cufflinks 1.465        
cufflinks 1.435        
cufflinks 1.381        
cufflinks 1.268        
cufflinks 1.481        
cufflinks 1.17       Low
cufflinks 0.954       Low
cufflinks 1.12       Low
cufflinks 2.274       High
cufflinks 1.743        
cufflinks 1.891        
cufflinks 1.798        
cufflinks 1.498        
cufflinks 1.637        
cufflinks 2.039        
cufflinks 1.629        
cufflinks 3.691       High
cufflinks 1.29        
cufflinks 1.655        

0 Strain