Gene : Seita.8G122100 S. italica v2.2
Defline:  (1 of 1) 1.14.11.33//4.2.99.18 - DNA oxidative demethylase / Alkylated DNA repair protein // DNA-(apurinic or apyrimidinic site) lyase / Phage-T4 UV endonuclease Genomic Order:  1221
Name:  ? Seita.8G122100 Secondary Identifier:  ? PAC:32716017
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G122100 0.5kb upstream 0.5kb upstream 3620 true scaffold_8: 23158419-23162038 Setaria italica
Seita.8G122100 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 23161539-23162038 Setaria italica
Seita.8G122100 0.5kb downstream 0.5kb downstream 3620 true scaffold_8: 23157919-23161538 Setaria italica
Seita.8G122100 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 23157919-23158418 Setaria italica
Seita.8G122100 1.0kb upstream 1.0kb upstream 4120 true scaffold_8: 23158419-23162538 Setaria italica
Seita.8G122100 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 23161539-23162538 Setaria italica
Seita.8G122100 1.0kb downstream 1.0kb downstream 4120 true scaffold_8: 23157419-23161538 Setaria italica
Seita.8G122100 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 23157419-23158418 Setaria italica
Seita.8G122100 2.0kb upstream 2.0kb upstream 5120 true scaffold_8: 23158419-23163538 Setaria italica
Seita.8G122100 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 23161539-23163538 Setaria italica
Seita.8G122100 2.0kb downstream 2.0kb downstream 5120 true scaffold_8: 23156419-23161538 Setaria italica
Seita.8G122100 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 23156419-23158418 Setaria italica
Seita.8G122100 5.0kb upstream 5.0kb upstream 8120 true scaffold_8: 23158419-23166538 Setaria italica
Seita.8G122100 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 23161539-23166538 Setaria italica
Seita.8G122100 5.0kb downstream 5.0kb downstream 8120 true scaffold_8: 23153419-23161538 Setaria italica
Seita.8G122100 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 23153419-23158418 Setaria italica
Seita.8G122100 10.0kb upstream 10.0kb upstream 13120 true scaffold_8: 23158419-23171538 Setaria italica
Seita.8G122100 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 23161539-23171538 Setaria italica
Seita.8G122100 10.0kb downstream 10.0kb downstream 13120 true scaffold_8: 23148419-23161538 Setaria italica
Seita.8G122100 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 23148419-23158418 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189508 5267 Panicoideae View MSA
124581923 5269 Grass View MSA
122044879 5273 Angiosperm View MSA
121344923 5274 Embryophyte View MSA
123425704 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.763       High
cufflinks 6.115        
cufflinks 3.887       Low
cufflinks 3.875       Low
cufflinks 3.739       Low
cufflinks 5.948        
cufflinks 5.151        
cufflinks 5.454        
cufflinks 4.993        
cufflinks 4.589        
cufflinks 5.81        
cufflinks 6.781        
cufflinks 5.905        
cufflinks 4.31        
cufflinks 6.821        
cufflinks 6.262        
cufflinks 7.201       High
cufflinks 6.912       High
cufflinks 3.435       Low
cufflinks 5.807        

0 Strain