Gene : Seita.8G125300 S. italica v2.2
Defline:  (1 of 33) PF12776 - Myb/SANT-like DNA-binding domain (Myb_DNA-bind_3) Genomic Order:  1253
Name:  ? Seita.8G125300 Secondary Identifier:  ? PAC:32717792
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G125300 0.5kb upstream 0.5kb upstream 1838 true scaffold_8: 23904302-23906139 Setaria italica
Seita.8G125300 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 23904302-23904801 Setaria italica
Seita.8G125300 0.5kb downstream 0.5kb downstream 1838 true scaffold_8: 23904802-23906639 Setaria italica
Seita.8G125300 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 23906140-23906639 Setaria italica
Seita.8G125300 1.0kb upstream 1.0kb upstream 2338 true scaffold_8: 23903802-23906139 Setaria italica
Seita.8G125300 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 23903802-23904801 Setaria italica
Seita.8G125300 1.0kb downstream 1.0kb downstream 2338 true scaffold_8: 23904802-23907139 Setaria italica
Seita.8G125300 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 23906140-23907139 Setaria italica
Seita.8G125300 2.0kb upstream 2.0kb upstream 3338 true scaffold_8: 23902802-23906139 Setaria italica
Seita.8G125300 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 23902802-23904801 Setaria italica
Seita.8G125300 2.0kb downstream 2.0kb downstream 3338 true scaffold_8: 23904802-23908139 Setaria italica
Seita.8G125300 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 23906140-23908139 Setaria italica
Seita.8G125300 5.0kb upstream 5.0kb upstream 6338 true scaffold_8: 23899802-23906139 Setaria italica
Seita.8G125300 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 23899802-23904801 Setaria italica
Seita.8G125300 5.0kb downstream 5.0kb downstream 6338 true scaffold_8: 23904802-23911139 Setaria italica
Seita.8G125300 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 23906140-23911139 Setaria italica
Seita.8G125300 10.0kb upstream 10.0kb upstream 11338 true scaffold_8: 23894802-23906139 Setaria italica
Seita.8G125300 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 23894802-23904801 Setaria italica
Seita.8G125300 10.0kb downstream 10.0kb downstream 11338 true scaffold_8: 23904802-23916139 Setaria italica
Seita.8G125300 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 23906140-23916139 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122116737 5267 Panicoideae View MSA
124591138 5269 Grass View MSA
122051638 5273 Angiosperm View MSA
121312593 5274 Embryophyte View MSA
123349751 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.156     High  
cufflinks 25.222     High  
cufflinks 16.94     High  
cufflinks 18.137     High  
cufflinks 18.451     High  
cufflinks 22.416     High  
cufflinks 24.693     High  
cufflinks 29.288     High High
cufflinks 22.369     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 16.787     High  
cufflinks 14.473     High  
cufflinks 7.782       Low
cufflinks 14.687     High  
cufflinks 10.625       Low
cufflinks 41.108     High High
cufflinks 12.321        
cufflinks 34.349     High High
cufflinks 15.776     High  
cufflinks 9.596       Low

0 Strain