Gene : Seita.8G214700 S. italica v2.2
Defline:  (1 of 22) PTHR23155//PTHR23155:SF541 - LEUCINE-RICH REPEAT-CONTAINING PROTEIN Genomic Order:  2147
Name:  ? Seita.8G214700 Secondary Identifier:  ? PAC:32715104
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G214700 0.5kb upstream 0.5kb upstream 8965 true scaffold_8: 36806003-36814967 Setaria italica
Seita.8G214700 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 36806003-36806502 Setaria italica
Seita.8G214700 0.5kb downstream 0.5kb downstream 8965 true scaffold_8: 36806503-36815467 Setaria italica
Seita.8G214700 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 36814968-36815467 Setaria italica
Seita.8G214700 1.0kb upstream 1.0kb upstream 9465 true scaffold_8: 36805503-36814967 Setaria italica
Seita.8G214700 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 36805503-36806502 Setaria italica
Seita.8G214700 1.0kb downstream 1.0kb downstream 9465 true scaffold_8: 36806503-36815967 Setaria italica
Seita.8G214700 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 36814968-36815967 Setaria italica
Seita.8G214700 2.0kb upstream 2.0kb upstream 10465 true scaffold_8: 36804503-36814967 Setaria italica
Seita.8G214700 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 36804503-36806502 Setaria italica
Seita.8G214700 2.0kb downstream 2.0kb downstream 10465 true scaffold_8: 36806503-36816967 Setaria italica
Seita.8G214700 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 36814968-36816967 Setaria italica
Seita.8G214700 5.0kb upstream 5.0kb upstream 13465 true scaffold_8: 36801503-36814967 Setaria italica
Seita.8G214700 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 36801503-36806502 Setaria italica
Seita.8G214700 5.0kb downstream 5.0kb downstream 13465 true scaffold_8: 36806503-36819967 Setaria italica
Seita.8G214700 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 36814968-36819967 Setaria italica
Seita.8G214700 10.0kb upstream 10.0kb upstream 18465 true scaffold_8: 36796503-36814967 Setaria italica
Seita.8G214700 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 36796503-36806502 Setaria italica
Seita.8G214700 10.0kb downstream 10.0kb downstream 18465 true scaffold_8: 36806503-36824967 Setaria italica
Seita.8G214700 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 36814968-36824967 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199797 5267 Panicoideae View MSA
124590789 5269 Grass View MSA
122051706 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.701       High
cufflinks 0.966        
cufflinks 0.241        
cufflinks 0.047     Low Low
cufflinks 0.122       Low
cufflinks 0.511        
cufflinks 1.216       High
cufflinks 0.344        
cufflinks 0.126       Low
cufflinks 0.299     Low  
cufflinks 1.121       High
cufflinks 0.428        
cufflinks 0.189        
cufflinks 0.448        
cufflinks 0.497        
cufflinks 0.863        
cufflinks 0.351        
cufflinks 0.727        
cufflinks 0.221        
cufflinks 0.416        

0 Strain