Gene : Seita.8G252400 S. italica v2.2
Defline:  (1 of 9) PF05340 - Protein of unknown function (DUF740) (DUF740) Genomic Order:  2524
Name:  ? Seita.8G252400 Secondary Identifier:  ? PAC:32716473
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G252400 0.5kb upstream 0.5kb upstream 1901 true scaffold_8: 40590866-40592766 Setaria italica
Seita.8G252400 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 40592267-40592766 Setaria italica
Seita.8G252400 0.5kb downstream 0.5kb downstream 1901 true scaffold_8: 40590366-40592266 Setaria italica
Seita.8G252400 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 40590366-40590865 Setaria italica
Seita.8G252400 1.0kb upstream 1.0kb upstream 2401 true scaffold_8: 40590866-40593266 Setaria italica
Seita.8G252400 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 40592267-40593266 Setaria italica
Seita.8G252400 1.0kb downstream 1.0kb downstream 2401 true scaffold_8: 40589866-40592266 Setaria italica
Seita.8G252400 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 40589866-40590865 Setaria italica
Seita.8G252400 2.0kb upstream 2.0kb upstream 3401 true scaffold_8: 40590866-40594266 Setaria italica
Seita.8G252400 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 40592267-40594266 Setaria italica
Seita.8G252400 2.0kb downstream 2.0kb downstream 3401 true scaffold_8: 40588866-40592266 Setaria italica
Seita.8G252400 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 40588866-40590865 Setaria italica
Seita.8G252400 5.0kb upstream 5.0kb upstream 6401 true scaffold_8: 40590866-40597266 Setaria italica
Seita.8G252400 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 40592267-40597266 Setaria italica
Seita.8G252400 5.0kb downstream 5.0kb downstream 6401 true scaffold_8: 40585866-40592266 Setaria italica
Seita.8G252400 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 40585866-40590865 Setaria italica
Seita.8G252400 10.0kb upstream 10.0kb upstream 11401 true scaffold_8: 40590866-40602266 Setaria italica
Seita.8G252400 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 40592267-40602266 Setaria italica
Seita.8G252400 10.0kb downstream 10.0kb downstream 11401 true scaffold_8: 40580866-40592266 Setaria italica
Seita.8G252400 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 40580866-40590865 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190289 5267 Panicoideae View MSA
124581223 5269 Grass View MSA
122051707 5273 Angiosperm View MSA
121312622 5274 Embryophyte View MSA
123349777 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.946        
cufflinks 0.988        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.049        
cufflinks 0.577        
cufflinks 0.849        
cufflinks 0.428        
cufflinks 1.877       High
cufflinks 0.909        
cufflinks 0.292        
cufflinks 0.672        
cufflinks 0.034     Low Low
cufflinks 0.64        
cufflinks 0.488        
cufflinks 0.764        
cufflinks 0.386        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.709        

0 Strain