Gene : Seita.8G250500 S. italica v2.2
Defline:  (1 of 7) PF01535//PF12854//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2505
Name:  ? Seita.8G250500 Secondary Identifier:  ? PAC:32716081
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G250500 0.5kb upstream 0.5kb upstream 2792 true scaffold_8: 40414771-40417562 Setaria italica
Seita.8G250500 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 40414771-40415270 Setaria italica
Seita.8G250500 0.5kb downstream 0.5kb downstream 2792 true scaffold_8: 40415271-40418062 Setaria italica
Seita.8G250500 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 40417563-40418062 Setaria italica
Seita.8G250500 1.0kb upstream 1.0kb upstream 3292 true scaffold_8: 40414271-40417562 Setaria italica
Seita.8G250500 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 40414271-40415270 Setaria italica
Seita.8G250500 1.0kb downstream 1.0kb downstream 3292 true scaffold_8: 40415271-40418562 Setaria italica
Seita.8G250500 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 40417563-40418562 Setaria italica
Seita.8G250500 2.0kb upstream 2.0kb upstream 4292 true scaffold_8: 40413271-40417562 Setaria italica
Seita.8G250500 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 40413271-40415270 Setaria italica
Seita.8G250500 2.0kb downstream 2.0kb downstream 4292 true scaffold_8: 40415271-40419562 Setaria italica
Seita.8G250500 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 40417563-40419562 Setaria italica
Seita.8G250500 5.0kb upstream 5.0kb upstream 7292 true scaffold_8: 40410271-40417562 Setaria italica
Seita.8G250500 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 40410271-40415270 Setaria italica
Seita.8G250500 5.0kb downstream 5.0kb downstream 7292 true scaffold_8: 40415271-40422562 Setaria italica
Seita.8G250500 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 40417563-40422562 Setaria italica
Seita.8G250500 10.0kb upstream 10.0kb upstream 12292 true scaffold_8: 40405271-40417562 Setaria italica
Seita.8G250500 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 40405271-40415270 Setaria italica
Seita.8G250500 10.0kb downstream 10.0kb downstream 12292 true scaffold_8: 40415271-40427562 Setaria italica
Seita.8G250500 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 40417563-40427562 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122032232 5273 Angiosperm View MSA
122055044 5267 Panicoideae Singleton cluster - no MSA
124354846 5269 Grass Singleton cluster - no MSA
121301155 5274 Embryophyte View MSA
123338836 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.624        
cufflinks 4.837        
cufflinks 4.797        
cufflinks 4.204        
cufflinks 5.681        
cufflinks 2.948        
cufflinks 18.719     High High
cufflinks 4.382        
cufflinks 5.644        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.885        
cufflinks 0.036     Low Low
cufflinks 0.29        
cufflinks 6.329        
cufflinks 0.069     Low Low
cufflinks 40.693     High High
cufflinks 0.072     Low Low
cufflinks 11.487     High  
cufflinks 7.181        
cufflinks 0.104     Low Low

0 Strain