Gene : Seita.9G001700 S. italica v2.2
Defline:  (1 of 1) PTHR22778:SF18 - RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 8, CHLOROPLASTIC Genomic Order:  17
Name:  ? Seita.9G001700 Secondary Identifier:  ? PAC:32687548
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G001700 0.5kb upstream 0.5kb upstream 4748 true scaffold_9: 127574-132321 Setaria italica
Seita.9G001700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 127574-128073 Setaria italica
Seita.9G001700 0.5kb downstream 0.5kb downstream 4748 true scaffold_9: 128074-132821 Setaria italica
Seita.9G001700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 132322-132821 Setaria italica
Seita.9G001700 1.0kb upstream 1.0kb upstream 5248 true scaffold_9: 127074-132321 Setaria italica
Seita.9G001700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 127074-128073 Setaria italica
Seita.9G001700 1.0kb downstream 1.0kb downstream 5248 true scaffold_9: 128074-133321 Setaria italica
Seita.9G001700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 132322-133321 Setaria italica
Seita.9G001700 2.0kb upstream 2.0kb upstream 6248 true scaffold_9: 126074-132321 Setaria italica
Seita.9G001700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 126074-128073 Setaria italica
Seita.9G001700 2.0kb downstream 2.0kb downstream 6248 true scaffold_9: 128074-134321 Setaria italica
Seita.9G001700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 132322-134321 Setaria italica
Seita.9G001700 5.0kb upstream 5.0kb upstream 9248 true scaffold_9: 123074-132321 Setaria italica
Seita.9G001700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 123074-128073 Setaria italica
Seita.9G001700 5.0kb downstream 5.0kb downstream 9248 true scaffold_9: 128074-137321 Setaria italica
Seita.9G001700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 132322-137321 Setaria italica
Seita.9G001700 10.0kb upstream 10.0kb upstream 14248 true scaffold_9: 118074-132321 Setaria italica
Seita.9G001700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 118074-128073 Setaria italica
Seita.9G001700 10.0kb downstream 10.0kb downstream 14248 true scaffold_9: 128074-142321 Setaria italica
Seita.9G001700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 132322-142321 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187757 5267 Panicoideae View MSA
124577126 5269 Grass View MSA
122046672 5273 Angiosperm View MSA
121346147 5274 Embryophyte View MSA
123427771 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.871        
cufflinks 3.969        
cufflinks 4.945        
cufflinks 4.266        
cufflinks 7.29        
cufflinks 3.701        
cufflinks 7.799       High
cufflinks 7.934       High
cufflinks 13.632     High High
cufflinks 1.376        
cufflinks 1.95        
cufflinks 0.569       Low
cufflinks 0.528       Low
cufflinks 6.935        
cufflinks 0.804       Low
cufflinks 6.383        
cufflinks 0.613       Low
cufflinks 2.944        
cufflinks 3.923        
cufflinks 0.472       Low

0 Strain