Gene : Seita.9G002000 S. italica v2.2
Defline:  (1 of 2) PTHR22847//PTHR22847:SF429 - WD40 REPEAT PROTEIN Genomic Order:  20
Name:  ? Seita.9G002000 Secondary Identifier:  ? PAC:32688825
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G002000 0.5kb upstream 0.5kb upstream 6204 true scaffold_9: 144057-150260 Setaria italica
Seita.9G002000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 149761-150260 Setaria italica
Seita.9G002000 0.5kb downstream 0.5kb downstream 6204 true scaffold_9: 143557-149760 Setaria italica
Seita.9G002000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 143557-144056 Setaria italica
Seita.9G002000 1.0kb upstream 1.0kb upstream 6704 true scaffold_9: 144057-150760 Setaria italica
Seita.9G002000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 149761-150760 Setaria italica
Seita.9G002000 1.0kb downstream 1.0kb downstream 6704 true scaffold_9: 143057-149760 Setaria italica
Seita.9G002000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 143057-144056 Setaria italica
Seita.9G002000 2.0kb upstream 2.0kb upstream 7704 true scaffold_9: 144057-151760 Setaria italica
Seita.9G002000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 149761-151760 Setaria italica
Seita.9G002000 2.0kb downstream 2.0kb downstream 7704 true scaffold_9: 142057-149760 Setaria italica
Seita.9G002000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 142057-144056 Setaria italica
Seita.9G002000 5.0kb upstream 5.0kb upstream 10704 true scaffold_9: 144057-154760 Setaria italica
Seita.9G002000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 149761-154760 Setaria italica
Seita.9G002000 5.0kb downstream 5.0kb downstream 10704 true scaffold_9: 139057-149760 Setaria italica
Seita.9G002000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 139057-144056 Setaria italica
Seita.9G002000 10.0kb upstream 10.0kb upstream 15704 true scaffold_9: 144057-159760 Setaria italica
Seita.9G002000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 149761-159760 Setaria italica
Seita.9G002000 10.0kb downstream 10.0kb downstream 15704 true scaffold_9: 134057-149760 Setaria italica
Seita.9G002000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 134057-144056 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191288 5267 Panicoideae View MSA
124580503 5269 Grass View MSA
122046787 5273 Angiosperm View MSA
123429146 5275 Viridiplantae View MSA
121350041 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.859     High High
cufflinks 20.124     High  
cufflinks 31.731     High High
cufflinks 26.359     High  
cufflinks 18.078     High Low
cufflinks 20.058     High  
cufflinks 20.818     High  
cufflinks 21.446     High  
cufflinks 15.916     High Low
cufflinks 14.526       Low
cufflinks 25.714     High  
cufflinks 24.096     High  
cufflinks 20.789     High  
cufflinks 22.335     High  
cufflinks 23.542     High  
cufflinks 29.883     High High
cufflinks 22.68     High  
cufflinks 32.374     High High
cufflinks 21.801     High  
cufflinks 23.167     High  

0 Strain