Gene : Seita.9G001000 S. italica v2.2
Defline:  (1 of 1) PTHR22957//PTHR22957:SF273 - TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN Genomic Order:  10
Name:  ? Seita.9G001000 Secondary Identifier:  ? PAC:32689694
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G001000 0.5kb upstream 0.5kb upstream 4251 true scaffold_9: 93396-97646 Setaria italica
Seita.9G001000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 97147-97646 Setaria italica
Seita.9G001000 0.5kb downstream 0.5kb downstream 4251 true scaffold_9: 92896-97146 Setaria italica
Seita.9G001000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 92896-93395 Setaria italica
Seita.9G001000 1.0kb upstream 1.0kb upstream 4751 true scaffold_9: 93396-98146 Setaria italica
Seita.9G001000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 97147-98146 Setaria italica
Seita.9G001000 1.0kb downstream 1.0kb downstream 4751 true scaffold_9: 92396-97146 Setaria italica
Seita.9G001000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 92396-93395 Setaria italica
Seita.9G001000 2.0kb upstream 2.0kb upstream 5751 true scaffold_9: 93396-99146 Setaria italica
Seita.9G001000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 97147-99146 Setaria italica
Seita.9G001000 2.0kb downstream 2.0kb downstream 5751 true scaffold_9: 91396-97146 Setaria italica
Seita.9G001000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 91396-93395 Setaria italica
Seita.9G001000 5.0kb upstream 5.0kb upstream 8751 true scaffold_9: 93396-102146 Setaria italica
Seita.9G001000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 97147-102146 Setaria italica
Seita.9G001000 5.0kb downstream 5.0kb downstream 8751 true scaffold_9: 88396-97146 Setaria italica
Seita.9G001000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 88396-93395 Setaria italica
Seita.9G001000 10.0kb upstream 10.0kb upstream 13751 true scaffold_9: 93396-107146 Setaria italica
Seita.9G001000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 97147-107146 Setaria italica
Seita.9G001000 10.0kb downstream 10.0kb downstream 13751 true scaffold_9: 83396-97146 Setaria italica
Seita.9G001000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 83396-93395 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188858 5267 Panicoideae View MSA
124572838 5269 Grass View MSA
122046428 5273 Angiosperm View MSA
121350403 5274 Embryophyte View MSA
123428253 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.424     High  
cufflinks 25.726     High  
cufflinks 18.195     High  
cufflinks 19.177     High  
cufflinks 17.139     High  
cufflinks 23.028     High  
cufflinks 20.169     High  
cufflinks 16.185     High  
cufflinks 13.991     High Low
cufflinks 17.206     High  
cufflinks 26.634     High High
cufflinks 21.119     High  
cufflinks 30.447     High High
cufflinks 14.84     High Low
cufflinks 32.303     High High
cufflinks 15.917     High  
cufflinks 22.237     High  
cufflinks 12.044     High Low
cufflinks 16.949     High  
cufflinks 25.145     High  

0 Strain