Gene : Seita.9G002600 S. italica v2.2
Defline:  (1 of 2) PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Genomic Order:  26
Name:  ? Seita.9G002600 Secondary Identifier:  ? PAC:32688251
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G002600 0.5kb upstream 0.5kb upstream 4120 true scaffold_9: 186702-190821 Setaria italica
Seita.9G002600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 186702-187201 Setaria italica
Seita.9G002600 0.5kb downstream 0.5kb downstream 4120 true scaffold_9: 187202-191321 Setaria italica
Seita.9G002600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 190822-191321 Setaria italica
Seita.9G002600 1.0kb upstream 1.0kb upstream 4620 true scaffold_9: 186202-190821 Setaria italica
Seita.9G002600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 186202-187201 Setaria italica
Seita.9G002600 1.0kb downstream 1.0kb downstream 4620 true scaffold_9: 187202-191821 Setaria italica
Seita.9G002600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 190822-191821 Setaria italica
Seita.9G002600 2.0kb upstream 2.0kb upstream 5620 true scaffold_9: 185202-190821 Setaria italica
Seita.9G002600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 185202-187201 Setaria italica
Seita.9G002600 2.0kb downstream 2.0kb downstream 5620 true scaffold_9: 187202-192821 Setaria italica
Seita.9G002600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 190822-192821 Setaria italica
Seita.9G002600 5.0kb upstream 5.0kb upstream 8620 true scaffold_9: 182202-190821 Setaria italica
Seita.9G002600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 182202-187201 Setaria italica
Seita.9G002600 5.0kb downstream 5.0kb downstream 8620 true scaffold_9: 187202-195821 Setaria italica
Seita.9G002600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 190822-195821 Setaria italica
Seita.9G002600 10.0kb upstream 10.0kb upstream 13620 true scaffold_9: 177202-190821 Setaria italica
Seita.9G002600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 177202-187201 Setaria italica
Seita.9G002600 10.0kb downstream 10.0kb downstream 13620 true scaffold_9: 187202-200821 Setaria italica
Seita.9G002600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 190822-200821 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197315 5267 Panicoideae View MSA
124575686 5269 Grass View MSA
122048196 5273 Angiosperm View MSA
121346372 5274 Embryophyte View MSA
123427883 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 68.613     High  
cufflinks 63.217     High  
cufflinks 12.731     High Low
cufflinks 3.892       Low
cufflinks 11.233     High Low
cufflinks 57.714     High  
cufflinks 46.581     High  
cufflinks 68.723     High  
cufflinks 105.736     High High
cufflinks 40.727     High  
cufflinks 53.15     High  
cufflinks 38.055     High  
cufflinks 31.78     High  
cufflinks 39.272     High  
cufflinks 47.949     High  
cufflinks 23.621     High  
cufflinks 44.094     High  
cufflinks 43.295     High  
cufflinks 14.472     High Low
cufflinks 46.898     High  

0 Strain