Gene : Seita.8G168600 S. italica v2.2
Defline:  (1 of 6) PF14309//PF14383 - Domain of unknown function (DUF4378) (DUF4378) // DUF761-associated sequence motif (VARLMGL) Genomic Order:  1686
Name:  ? Seita.8G168600 Secondary Identifier:  ? PAC:32717670
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G168600 0.5kb upstream 0.5kb upstream 3331 true scaffold_8: 31134790-31138120 Setaria italica
Seita.8G168600 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 31137621-31138120 Setaria italica
Seita.8G168600 0.5kb downstream 0.5kb downstream 3331 true scaffold_8: 31134290-31137620 Setaria italica
Seita.8G168600 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 31134290-31134789 Setaria italica
Seita.8G168600 1.0kb upstream 1.0kb upstream 3831 true scaffold_8: 31134790-31138620 Setaria italica
Seita.8G168600 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 31137621-31138620 Setaria italica
Seita.8G168600 1.0kb downstream 1.0kb downstream 3831 true scaffold_8: 31133790-31137620 Setaria italica
Seita.8G168600 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 31133790-31134789 Setaria italica
Seita.8G168600 2.0kb upstream 2.0kb upstream 4831 true scaffold_8: 31134790-31139620 Setaria italica
Seita.8G168600 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 31137621-31139620 Setaria italica
Seita.8G168600 2.0kb downstream 2.0kb downstream 4831 true scaffold_8: 31132790-31137620 Setaria italica
Seita.8G168600 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 31132790-31134789 Setaria italica
Seita.8G168600 5.0kb upstream 5.0kb upstream 7831 true scaffold_8: 31134790-31142620 Setaria italica
Seita.8G168600 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 31137621-31142620 Setaria italica
Seita.8G168600 5.0kb downstream 5.0kb downstream 7831 true scaffold_8: 31129790-31137620 Setaria italica
Seita.8G168600 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 31129790-31134789 Setaria italica
Seita.8G168600 10.0kb upstream 10.0kb upstream 12831 true scaffold_8: 31134790-31147620 Setaria italica
Seita.8G168600 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 31137621-31147620 Setaria italica
Seita.8G168600 10.0kb downstream 10.0kb downstream 12831 true scaffold_8: 31124790-31137620 Setaria italica
Seita.8G168600 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 31124790-31134789 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187917 5267 Panicoideae View MSA
124577026 5269 Grass View MSA
122048942 5273 Angiosperm View MSA
121311180 5274 Embryophyte View MSA
123348511 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.982        
cufflinks 3.038       High
cufflinks 0.004     Low Low
cufflinks 0.01     Low Low
cufflinks 0.013     Low Low
cufflinks 3.998       High
cufflinks 0.351        
cufflinks 0.629        
cufflinks 0.181        
cufflinks 5.772       High
cufflinks 1.593        
cufflinks 0.287        
cufflinks 0.172     Low  
cufflinks 0.004     Low Low
cufflinks 0.777        
cufflinks 0.36        
cufflinks 0.752        
cufflinks 0.081     Low  
cufflinks 0.02     Low Low
cufflinks 1.149        

0 Strain