Gene : Seita.8G170600 S. italica v2.2
Defline:  (1 of 1) 2.8.4.3 - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase / tRNA-i6A37 methylthiotransferase Genomic Order:  1706
Name:  ? Seita.8G170600 Secondary Identifier:  ? PAC:32715025
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G170600 0.5kb upstream 0.5kb upstream 4566 true scaffold_8: 31325726-31330291 Setaria italica
Seita.8G170600 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 31329792-31330291 Setaria italica
Seita.8G170600 0.5kb downstream 0.5kb downstream 4566 true scaffold_8: 31325226-31329791 Setaria italica
Seita.8G170600 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 31325226-31325725 Setaria italica
Seita.8G170600 1.0kb upstream 1.0kb upstream 5066 true scaffold_8: 31325726-31330791 Setaria italica
Seita.8G170600 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 31329792-31330791 Setaria italica
Seita.8G170600 1.0kb downstream 1.0kb downstream 5066 true scaffold_8: 31324726-31329791 Setaria italica
Seita.8G170600 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 31324726-31325725 Setaria italica
Seita.8G170600 2.0kb upstream 2.0kb upstream 6066 true scaffold_8: 31325726-31331791 Setaria italica
Seita.8G170600 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 31329792-31331791 Setaria italica
Seita.8G170600 2.0kb downstream 2.0kb downstream 6066 true scaffold_8: 31323726-31329791 Setaria italica
Seita.8G170600 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 31323726-31325725 Setaria italica
Seita.8G170600 5.0kb upstream 5.0kb upstream 9066 true scaffold_8: 31325726-31334791 Setaria italica
Seita.8G170600 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 31329792-31334791 Setaria italica
Seita.8G170600 5.0kb downstream 5.0kb downstream 9066 true scaffold_8: 31320726-31329791 Setaria italica
Seita.8G170600 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 31320726-31325725 Setaria italica
Seita.8G170600 10.0kb upstream 10.0kb upstream 14066 true scaffold_8: 31325726-31339791 Setaria italica
Seita.8G170600 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 31329792-31339791 Setaria italica
Seita.8G170600 10.0kb downstream 10.0kb downstream 14066 true scaffold_8: 31315726-31329791 Setaria italica
Seita.8G170600 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 31315726-31325725 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190478 5267 Panicoideae View MSA
124576915 5269 Grass View MSA
122047649 5273 Angiosperm View MSA
121350864 5274 Embryophyte View MSA
123427541 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.802        
cufflinks 7.143        
cufflinks 10.654        
cufflinks 5.729        
cufflinks 14.656     High  
cufflinks 6.909        
cufflinks 16.641     High High
cufflinks 17.447     High High
cufflinks 29.945     High High
cufflinks 4.378        
cufflinks 7.768        
cufflinks 2.997       Low
cufflinks 2.612       Low
cufflinks 11.355        
cufflinks 4.326        
cufflinks 16.941     High High
cufflinks 3.927       Low
cufflinks 8.816        
cufflinks 7.748        
cufflinks 3.687       Low

0 Strain