Gene : Seita.8G170900 S. italica v2.2
Defline:  (1 of 4) 3.1.4.3 - Phospholipase C / Lipophosphodiesterase I Genomic Order:  1709
Name:  ? Seita.8G170900 Secondary Identifier:  ? PAC:32717305
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica LIPASYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G170900 0.5kb upstream 0.5kb upstream 3746 true scaffold_8: 31340421-31344166 Setaria italica
Seita.8G170900 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 31343667-31344166 Setaria italica
Seita.8G170900 0.5kb downstream 0.5kb downstream 3746 true scaffold_8: 31339921-31343666 Setaria italica
Seita.8G170900 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 31339921-31340420 Setaria italica
Seita.8G170900 1.0kb upstream 1.0kb upstream 4246 true scaffold_8: 31340421-31344666 Setaria italica
Seita.8G170900 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 31343667-31344666 Setaria italica
Seita.8G170900 1.0kb downstream 1.0kb downstream 4246 true scaffold_8: 31339421-31343666 Setaria italica
Seita.8G170900 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 31339421-31340420 Setaria italica
Seita.8G170900 2.0kb upstream 2.0kb upstream 5246 true scaffold_8: 31340421-31345666 Setaria italica
Seita.8G170900 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 31343667-31345666 Setaria italica
Seita.8G170900 2.0kb downstream 2.0kb downstream 5246 true scaffold_8: 31338421-31343666 Setaria italica
Seita.8G170900 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 31338421-31340420 Setaria italica
Seita.8G170900 5.0kb upstream 5.0kb upstream 8246 true scaffold_8: 31340421-31348666 Setaria italica
Seita.8G170900 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 31343667-31348666 Setaria italica
Seita.8G170900 5.0kb downstream 5.0kb downstream 8246 true scaffold_8: 31335421-31343666 Setaria italica
Seita.8G170900 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 31335421-31340420 Setaria italica
Seita.8G170900 10.0kb upstream 10.0kb upstream 13246 true scaffold_8: 31340421-31353666 Setaria italica
Seita.8G170900 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 31343667-31353666 Setaria italica
Seita.8G170900 10.0kb downstream 10.0kb downstream 13246 true scaffold_8: 31330421-31343666 Setaria italica
Seita.8G170900 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 31330421-31340420 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180412 5267 Panicoideae View MSA
124587656 5269 Grass View MSA
122043766 5273 Angiosperm View MSA
121350885 5274 Embryophyte View MSA
123381922 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.397        
cufflinks 0.289        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.147        
cufflinks 0.272        
cufflinks 0.402        
cufflinks 0.2        
cufflinks 0.469        
cufflinks 0.493        
cufflinks 0.603        
cufflinks 0.787        
cufflinks 0.239        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.762        
cufflinks 0.064     Low Low
cufflinks 0.361        
cufflinks 0.031     Low Low
cufflinks 0.009     Low Low
cufflinks 1.899       High

0 Strain