Gene : Seita.8G175000 S. italica v2.2
Defline:  (1 of 5) PTHR11941//PTHR11941:SF81 - ENOYL-COA HYDRATASE-RELATED Genomic Order:  1750
Name:  ? Seita.8G175000 Secondary Identifier:  ? PAC:32717785
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7574 Setaria italica pathologic  
Sitalica VALDEG-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G175000 0.5kb upstream 0.5kb upstream 5894 true scaffold_8: 31744692-31750585 Setaria italica
Seita.8G175000 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 31744692-31745191 Setaria italica
Seita.8G175000 0.5kb downstream 0.5kb downstream 5894 true scaffold_8: 31745192-31751085 Setaria italica
Seita.8G175000 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 31750586-31751085 Setaria italica
Seita.8G175000 1.0kb upstream 1.0kb upstream 6394 true scaffold_8: 31744192-31750585 Setaria italica
Seita.8G175000 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 31744192-31745191 Setaria italica
Seita.8G175000 1.0kb downstream 1.0kb downstream 6394 true scaffold_8: 31745192-31751585 Setaria italica
Seita.8G175000 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 31750586-31751585 Setaria italica
Seita.8G175000 2.0kb upstream 2.0kb upstream 7394 true scaffold_8: 31743192-31750585 Setaria italica
Seita.8G175000 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 31743192-31745191 Setaria italica
Seita.8G175000 2.0kb downstream 2.0kb downstream 7394 true scaffold_8: 31745192-31752585 Setaria italica
Seita.8G175000 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 31750586-31752585 Setaria italica
Seita.8G175000 5.0kb upstream 5.0kb upstream 10394 true scaffold_8: 31740192-31750585 Setaria italica
Seita.8G175000 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 31740192-31745191 Setaria italica
Seita.8G175000 5.0kb downstream 5.0kb downstream 10394 true scaffold_8: 31745192-31755585 Setaria italica
Seita.8G175000 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 31750586-31755585 Setaria italica
Seita.8G175000 10.0kb upstream 10.0kb upstream 15394 true scaffold_8: 31735192-31750585 Setaria italica
Seita.8G175000 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 31735192-31745191 Setaria italica
Seita.8G175000 10.0kb downstream 10.0kb downstream 15394 true scaffold_8: 31745192-31760585 Setaria italica
Seita.8G175000 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 31750586-31760585 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121844283 5273 Angiosperm View MSA
122118180 5267 Panicoideae View MSA
124412028 5269 Grass View MSA
121115009 5274 Embryophyte View MSA
123428448 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.135        
cufflinks 1.188       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low Low
cufflinks 1.52       High
cufflinks 0.097     Low  
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.036     Low  
cufflinks 0.085     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.087     Low  
cufflinks 0.01     Low  
cufflinks 0.041     Low  
cufflinks 0.043     Low  
cufflinks 0.004     Low Low
cufflinks 0.015     Low  
cufflinks 0.067     Low  
cufflinks 0.007     Low Low

0 Strain